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Open data
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Basic information
Entry | Database: PDB / ID: 1qba | ||||||
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Title | BACTERIAL CHITOBIASE, GLYCOSYL HYDROLASE FAMILY 20 | ||||||
![]() | CHITOBIASE | ||||||
![]() | GLYCOSYL HYDROLASE / CHITOBIASE / CHITINOLYSIS / BA8-BARREL | ||||||
Function / homology | ![]() glycosaminoglycan metabolic process / beta-N-acetylhexosaminidase / N-acetyl-beta-D-galactosaminidase activity / ganglioside catabolic process / chitin catabolic process / polysaccharide binding / polysaccharide catabolic process / beta-N-acetylglucosaminidase activity / periplasmic space / lysosome / membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Tews, I. / Perrakis, A. / Oppenheim, A. / Dauter, Z. / Wilson, K.S. / Vorgias, C.E. | ||||||
![]() | ![]() Title: Bacterial chitobiase structure provides insight into catalytic mechanism and the basis of Tay-Sachs disease. Authors: Tews, I. / Perrakis, A. / Oppenheim, A. / Dauter, Z. / Wilson, K.S. / Vorgias, C.E. #1: ![]() Title: N-Acetylglucosaminidase (Chitobiase) from Serratia Marcescens: Gene Sequence, and Protein Production and Purification in Escherichia Coli Authors: Tews, I. / Vincentelli, R. / Vorgias, C.E. #3: ![]() Title: Cloning of the Gene Coding for Chitobiase of Serratia Marcescens Authors: Kless, H. / Sitrit, Y. / Chet, I. / Oppenheim, A.B. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 327.8 KB | Display | ![]() |
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PDB format | ![]() | 277.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 431 KB | Display | ![]() |
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Full document | ![]() | 446 KB | Display | |
Data in XML | ![]() | 38.9 KB | Display | |
Data in CIF | ![]() | 60.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 95923.898 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Description: PERIPLASMATIC TARGETING SEQUENCE RESIDUES 1-27 CLEAVED OFF DURING MATURATION Plasmid: PEMBL18 / Cellular location (production host): PERIPLASM / Production host: ![]() ![]() | ||
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#2: Chemical | ChemComp-SO4 / #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.4 Å3/Da / Density % sol: 44.4 % | ||||||||||||||||||||
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Crystal grow | Method: vapor diffusion, hanging drop / pH: 5.6 Details: CRYSTAL WERE GROWN AT ROOM TEMPERATURE FROM HANGING DROPS CONTAINING 62% SATURATED AMMONIUM SULFATE, 1.5% ISOPROPANOL AND 100 MM CACODYLATE, PH 5.6., vapor diffusion - hanging drop Temp details: room temp | ||||||||||||||||||||
Crystal | *PLUS | ||||||||||||||||||||
Crystal grow | *PLUS Method: unknown | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 277 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: May 10, 1994 / Details: SEGMENTED TOROIDAL MIRROR |
Radiation | Monochromator: SI(111) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.85→10 Å / Num. obs: 82854 / % possible obs: 99.9 % / Observed criterion σ(I): -3 / Redundancy: 5.5 % / Biso Wilson estimate: 17.11 Å2 / Rmerge(I) obs: 0.062 / Net I/σ(I): 15.8 |
Reflection shell | Resolution: 1.85→1.88 Å / Redundancy: 3.2 % / Rmerge(I) obs: 0.276 / Mean I/σ(I) obs: 3.2 / % possible all: 99.9 |
Reflection | *PLUS Highest resolution: 1.9 Å / Lowest resolution: 15 Å / Num. obs: 83596 |
Reflection shell | *PLUS % possible obs: 99.8 % |
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Processing
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Refinement | Method to determine structure: ![]() Details: RESIDUES 155 AND 156: THERE IS ONLY WEAK DENSITY AND THESE RESIDUES MAY FORM (TWO OR MORE) ALTERNATIVE LOOP CONFORMATIONS.
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Displacement parameters | Biso mean: 17.96 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati d res low obs: 4.5 Å / Luzzati sigma a obs: 0.11 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.85→10 Å
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Refine LS restraints |
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Software | *PLUS Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 1.9 Å / Lowest resolution: 15 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 17.963 Å2 |