[English] 日本語
![](img/lk-miru.gif)
- PDB-1qah: CRYSTAL STRUCTURE OF PERCHLORIC ACID SOLUBLE PROTEIN-A TRANSLATIO... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1qah | ||||||
---|---|---|---|---|---|---|---|
Title | CRYSTAL STRUCTURE OF PERCHLORIC ACID SOLUBLE PROTEIN-A TRANSLATIONAL INHIBITOR | ||||||
![]() | PERCHLORIC ACID SOLUBLE PROTEIN | ||||||
![]() | ALPHA-BETA STRUCTURE | ||||||
Function / homology | ![]() Threonine catabolism / 2-iminobutanoate/2-iminopropanoate deaminase / ion binding / 2-iminobutanoate/2-iminopropanoate deaminase / : / deaminase activity / response to lipid / response to salt / G1 to G0 transition / long-chain fatty acid binding ...Threonine catabolism / 2-iminobutanoate/2-iminopropanoate deaminase / ion binding / 2-iminobutanoate/2-iminopropanoate deaminase / : / deaminase activity / response to lipid / response to salt / G1 to G0 transition / long-chain fatty acid binding / mRNA destabilization / mRNA catabolic process / transition metal ion binding / lung development / kidney development / brain development / negative regulation of epithelial cell proliferation / RNA endonuclease activity, producing 3'-phosphomonoesters / peroxisome / negative regulation of translation / mitochondrial matrix / mRNA binding / mitochondrion / identical protein binding / nucleus / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Djinovic Carugo, K. / Oka, T. | ||||||
![]() | ![]() Title: Crystal Structure of Perchloric Acid Soluble Protein-a Translational Inhibitor Authors: Djinovic Carugo, K. / Oka, T. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 68.4 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 51.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||||||||||||||||||||
2 | ![]()
| |||||||||||||||||||||||||||
3 | ![]()
| |||||||||||||||||||||||||||
Unit cell |
| |||||||||||||||||||||||||||
Components on special symmetry positions |
|
-
Components
#1: Protein | Mass: 14184.187 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() #2: Water | ChemComp-HOH / | |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.12 Å3/Da / Density % sol: 42.04 % |
---|---|
Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 4.5 Details: VAPOR DIFFUSION, HANGING DROP, PH 4.5, 293K, PEG 8000, SODIUM ACETATE, AMMONIUM SULPHATE |
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Oct 5, 1998 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9183 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→63.2 Å / Num. all: 22619 / Num. obs: 22619 / % possible obs: 97.8 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 3.34 % / Biso Wilson estimate: 24.1 Å2 / Rmerge(I) obs: 0.031 / Net I/σ(I): 34.14 |
Reflection shell | Resolution: 1.8→1.83 Å / Redundancy: 2.93 % / Rmerge(I) obs: 0.277 / % possible all: 96.6 |
-
Processing
Software |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 1.8→40 Å / Cross valid method: FREE R-VALUE / σ(F): 0 / σ(I): 0 / Stereochemistry target values: ENGH & HUBER
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.8→40 Å
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
|