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- PDB-1q3j: Solution structure of ALO3: a new knottin-type antifungal peptide... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1q3j | ||||||
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Title | Solution structure of ALO3: a new knottin-type antifungal peptide from the insect Acrocinus longimanus | ||||||
![]() | ALO3 | ||||||
![]() | ANTIFUNGAL PROTEIN / knottin / cystine-knot | ||||||
Function / homology | Gurmarin/antimicrobial peptide / Antifungal peptide / Gurmarin/antifungal peptide / Antimicrobial peptide, C6 type, conserved site / Plant C6 type antimicrobial peptide (AMP) signature. / defense response to fungus / killing of cells of another organism / extracellular region / Antimicrobial peptide Alo-3![]() | ||||||
Method | SOLUTION NMR / simulated annealing with torsion angle space | ||||||
![]() | Barbault, F. / Landon, C. / Guenneugues, M. / Meyer, J.P. / Schott, V. / Dimarrcq, J.L. / Vovelle, F. | ||||||
![]() | ![]() Title: Solution structure of Alo-3: a new knottin-type antifungal peptide from the insect Acrocinus longimanus. Authors: Barbault, F. / Landon, C. / Guenneugues, M. / Meyer, J.P. / Schott, V. / Dimarcq, J.L. / Vovelle, F. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 103.4 KB | Display | ![]() |
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PDB format | ![]() | 88.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 331.3 KB | Display | ![]() |
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Full document | ![]() | 392.5 KB | Display | |
Data in XML | ![]() | 7.9 KB | Display | |
Data in CIF | ![]() | 11.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 3881.415 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. The sequence of the peptide is naturally found in Acrocinus longimanus (giant harlequin beetle). References: UniProt: P83653 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined using standard 2D homonuclear techniques. |
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Sample preparation
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing with torsion angle space / Software ordinal: 1 Details: Determination of disulfide pattern was done using ambiguous disulfide restraints. | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy and the least restraint violations Conformers calculated total number: 100 / Conformers submitted total number: 10 |