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Yorodumi- PDB-1paz: REFINEMENT OF THE STRUCTURE OF PSEUDOAZURIN FROM ALCALIGENES FAEC... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1paz | ||||||
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Title | REFINEMENT OF THE STRUCTURE OF PSEUDOAZURIN FROM ALCALIGENES FAECALIS S-6 AT 1.55 ANGSTROMS RESOLUTION | ||||||
Components | PSEUDOAZURIN PRECURSOR | ||||||
Keywords | ELECTRON TRANSFER(CUPROPROTEIN) | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Alcaligenes faecalis (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.55 Å | ||||||
Authors | Petratos, K. / Dauter, Z. / Wilson, K.S. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.B / Year: 1988 Title: Refinement of the structure of pseudoazurin from Alcaligenes faecalis S-6 at 1.55 A resolution. Authors: Petratos, K. / Dauter, Z. / Wilson, K.S. #1: Journal: FEBS Lett. / Year: 1987 Title: The Crystal Structure of Pseudoazurin from Alcaligenes Faecalis S-6 Determined at 2.9 Angstroms Resolution Authors: Petratos, K. / Banner, D.W. / Beppu, T. / Wilson, K.S. / Tsernoglou, D. | ||||||
History |
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Remark 700 | SHEET THE NINE-STRANDED SHEET DESCRIBED ON THE *SHEET* RECORDS BELOW IS ACTUALLY AN EIGHT-STRANDED ...SHEET THE NINE-STRANDED SHEET DESCRIBED ON THE *SHEET* RECORDS BELOW IS ACTUALLY AN EIGHT-STRANDED BETA BARREL. THIS IS DENOTED BY THE FIRST STRAND RECURRING AS THE LAST STRAND. STRAND 8 IS ADJACENT TO STRAND 9 (IDENTICAL TO STRAND 1) BUT THERE ARE NO HYDROGEN BONDS BETWEEN STRANDS 8 AND 9. THE STRANDS ARE IDENTIFIED AS 1, 2, 3, 4, 5, 6, 7, 8, AND 9 ON THE *SHEET* RECORDS BELOW AND AS STRANDS 5, 4, 7, 8, 2, 1, 3, 6, AND 5 IN THE PAPER CITED AS REFERENCE 1 ABOVE. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1paz.cif.gz | 37.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1paz.ent.gz | 25.4 KB | Display | PDB format |
PDBx/mmJSON format | 1paz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1paz_validation.pdf.gz | 409.7 KB | Display | wwPDB validaton report |
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Full document | 1paz_full_validation.pdf.gz | 410.5 KB | Display | |
Data in XML | 1paz_validation.xml.gz | 7.9 KB | Display | |
Data in CIF | 1paz_validation.cif.gz | 10.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pa/1paz ftp://data.pdbj.org/pub/pdb/validation_reports/pa/1paz | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: RESIDUE PRO 20 IS A CIS PROLINE. |
-Components
#1: Protein | Mass: 13383.511 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Alcaligenes faecalis (bacteria) / References: UniProt: P04377 |
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#2: Chemical | ChemComp-CU / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.65 Å3/Da / Density % sol: 53.66 % |
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Crystal grow | *PLUS Method: unknown |
-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.55 Å / Num. obs: 19770 / Num. measured all: 108356 / Rmerge(I) obs: 0.079 |
-Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.55→9 Å / Rfactor obs: 0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.55→9 Å
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Refine LS restraints |
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Refinement | *PLUS Rfactor obs: 0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |