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Open data
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Basic information
Entry | Database: PDB / ID: 1oll | ||||||
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Title | Extracellular region of the human receptor NKp46 | ||||||
![]() | NK RECEPTOR | ||||||
![]() | IMMUNE SYSTEM/RECEPTOR / NK CELL TRIGGERING RECEPTOR / IMMUNE SYSTEM / IG DOMAIN / CYTOTOXICITY / C2-TYPE IG-LIKE DOMAINS / IMMUNE SYSTEM-RECEPTOR complex | ||||||
Function / homology | ![]() regulation of natural killer cell mediated cytotoxicity / natural killer cell activation / SWI/SNF complex / plasma membrane => GO:0005886 / regulation of immune response / cellular defense response / Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell / signal transduction / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Ponassi, M. / Cantoni, C. / Biassoni, R. / Conte, R. / Spallarossa, A. / Pesce, A. / Moretta, A. / Moretta, L. / Bolognesi, M. / Bordo, D. | ||||||
![]() | ![]() Title: Structure of the Human Nk Cell Triggering Receptor Nkp46 Ectodomain Authors: Ponassi, M. / Cantoni, C. / Biassoni, R. / Conte, R. / Spallarossa, A. / Pesce, A. / Moretta, A. / Moretta, L. / Bolognesi, M. / Bordo, D. | ||||||
History |
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Remark 700 | SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN ... SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 55.1 KB | Display | ![]() |
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PDB format | ![]() | 38.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 435 KB | Display | ![]() |
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Full document | ![]() | 438.5 KB | Display | |
Data in XML | ![]() | 11.3 KB | Display | |
Data in CIF | ![]() | 15.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1g0xS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 21323.410 Da / Num. of mol.: 1 / Fragment: EXTRACELLULAR DOMAIN, RESIDUES 25-212 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Chemical | ChemComp-EDO / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.78 Å3/Da / Density % sol: 58 % | ||||||||||||||||||||||||
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Crystal grow | Temperature: 277 K / pH: 7.8 Details: 15% PEG 8000, 100 MM HEPES PH 7.8, 20% ETHANEDIOL, AT 277 K | ||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 277 K / pH: 7.8 / Method: vapor diffusion | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Jun 15, 2002 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.8431 Å / Relative weight: 1 |
Reflection | Resolution: 1.93→40 Å / Num. obs: 18944 / % possible obs: 100 % / Redundancy: 5 % / Rmerge(I) obs: 0.075 / Net I/σ(I): 22.9 |
Reflection shell | Resolution: 1.93→1.96 Å / Redundancy: 5 % / Rmerge(I) obs: 0.765 / Mean I/σ(I) obs: 2.4 / % possible all: 100 |
Reflection | *PLUS Highest resolution: 1.93 Å / Lowest resolution: 40 Å / % possible obs: 100 % / Rmerge(I) obs: 0.075 |
Reflection shell | *PLUS % possible obs: 100 % / Rmerge(I) obs: 0.765 / Mean I/σ(I) obs: 2.4 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1G0X Resolution: 1.93→40 Å / SU B: 3.796 / SU ML: 0.108 / Cross valid method: THROUGHOUT / ESU R: 0.145 / ESU R Free: 0.154 Details: SOME ATOMS HAVE BEEN REFINED WITH AN OCCUPANCY OF 0.00 DUE TO POOR ELECTRON DENSITY.
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Displacement parameters | Biso mean: 37.7 Å2
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Refinement step | Cycle: LAST / Resolution: 1.93→40 Å
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Refinement | *PLUS % reflection Rfree: 5 % | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||
Refine LS restraints | *PLUS
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