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Open data
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Basic information
Entry | Database: PDB / ID: 1nm3 | ||||||
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Title | Crystal structure of Heamophilus influenza hybrid-Prx5 | ||||||
![]() | Protein HI0572 | ||||||
![]() | ELECTRON TRANSPORT / hybrid / peroxiredoxin / glutaredoxin | ||||||
Function / homology | ![]() glutathione-dependent peroxiredoxin / thioredoxin peroxidase activity / protein-disulfide reductase activity / cell redox homeostasis / hydrogen peroxide catabolic process / cellular response to oxidative stress / electron transfer activity / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Kim, S.J. / Woo, J.R. / Hwang, Y.S. / Jeong, D.G. / Shin, D.H. / Kim, K.H. / Ryu, S.E. | ||||||
![]() | ![]() Title: The Tetrameric Structure of Haemophilus influenza Hybrid Prx5 Reveals Interactions between Electron Donor and Acceptor Proteins. Authors: Kim, S.J. / Woo, J.R. / Hwang, Y.S. / Jeong, D.G. / Shin, D.H. / Kim, K. / Ryu, S.E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 98.6 KB | Display | ![]() |
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PDB format | ![]() | 82.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 27149.689 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | ChemComp-SO4 / |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.91 Å3/Da / Density % sol: 57.44 % | ||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 8 Details: Ammonium sulfate, sodium acetate, tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 180 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Nov 22, 2001 / Details: mirrors |
Radiation | Monochromator: mirrors / Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9795 Å / Relative weight: 1 |
Reflection | Resolution: 2.8→99 Å / Num. all: 6059 / Num. obs: 15821 / % possible obs: 98.5 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 |
Reflection shell | Resolution: 2.8→99 Å / % possible all: 98.5 |
Reflection | *PLUS Num. obs: 15906 / Num. measured all: 407938 / Rmerge(I) obs: 0.085 |
Reflection shell | *PLUS Highest resolution: 2.8 Å / Lowest resolution: 2.95 Å / % possible obs: 100 % / Rmerge(I) obs: 0.264 / Mean I/σ(I) obs: 2.8 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 2.8→99 Å
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Refinement | *PLUS Lowest resolution: 99 Å / % reflection Rfree: 5 % | ||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||
Refine LS restraints | *PLUS
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