[English] 日本語
![](img/lk-miru.gif)
- PDB-1muv: Sheared A(anti)-A(anti) Base Pairs in a Destabilizing 2x2 Interna... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1muv | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Title | Sheared A(anti)-A(anti) Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2 | ||||||||||||||||||
![]() | 5'-R(*![]() RNA / ribonucleic acid / duplex / tandem mismatch / AA mismatch | Function / homology | RNA | ![]() Method | SOLUTION NMR / simulated annealing, energy minimization | ![]() Znosko, B.M. / Burkard, M.E. / Schroeder, S.J. / Krugh, T.R. / Turner, D.H. | ![]() ![]() Title: Sheared Aanti-Aanti Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2 Authors: Znosko, B.M. / Burkard, M.E. / Schroeder, S.J. / Krugh, T.R. / Turner, D.H. #1: ![]() Title: Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2 Authors: Znosko, B.M. / Burkard, M.E. / Krugh, T.R. / Turner, D.H. History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 19 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 12.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 293.9 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 293.7 KB | Display | |
Data in XML | ![]() | 1.4 KB | Display | |
Data in CIF | ![]() | 1.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: RNA chain | Mass: 2870.783 Da / Num. of mol.: 2 / Source method: obtained synthetically |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
---|---|
NMR experiment | Type: 2D NOESY |
-
Sample preparation
Details |
| |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample conditions |
| |||||||||||||||
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
---|---|
Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 500 MHz |
-
Processing
NMR software |
| ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: simulated annealing, energy minimization / Software ordinal: 1 Details: The structure is based on a total of 83 interproton distance restraints per strand, 18 hydrogen bond restraints, and 46 dihedral angle restraints per strand | ||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||
NMR ensemble | Conformers submitted total number: 1 |