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Yorodumi- PDB-1mpz: NMR solution structure of native Viperidae lebetina obtusa protein -
+Open data
-Basic information
Entry | Database: PDB / ID: 1mpz | ||||||
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Title | NMR solution structure of native Viperidae lebetina obtusa protein | ||||||
Components | Obtustatin | ||||||
Keywords | HYDROLASE / disintegrin | ||||||
Function / homology | Function and homology information toxin activity / angiogenesis / cell differentiation / extracellular region Similarity search - Function | ||||||
Biological species | Macrovipera lebetina obtusa (snake) | ||||||
Method | SOLUTION NMR / Manual assignment by Wuthrich protocols, automatic NOESY assignment extension by NOAH | ||||||
Authors | Moreno-Murciano, M.P. / Monleon, D. / Marcinkiewicz, C. / Calvete, J.J. / Celda, B. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 2003 Title: NMR Solution Structure of the Non-RGD Disintegrin Obtustatin Authors: Moreno-Murciano, M.P. / Monleon, D. / Marcinkiewicz, C. / Calvete, J.J. / Celda, B. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1mpz.cif.gz | 260.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1mpz.ent.gz | 219.6 KB | Display | PDB format |
PDBx/mmJSON format | 1mpz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1mpz_validation.pdf.gz | 353.7 KB | Display | wwPDB validaton report |
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Full document | 1mpz_full_validation.pdf.gz | 593.3 KB | Display | |
Data in XML | 1mpz_validation.xml.gz | 47.6 KB | Display | |
Data in CIF | 1mpz_validation.cif.gz | 66.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mp/1mpz ftp://data.pdbj.org/pub/pdb/validation_reports/mp/1mpz | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 4407.168 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Macrovipera lebetina obtusa (snake) / Species: Macrovipera lebetina / Strain: obtusa / References: UniProt: P83469 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: Manual assignment by Wuthrich protocols, automatic NOESY assignment extension by NOAH Software ordinal: 1 / Details: XPLOR, BRUNGER, A. | ||||||||||||||||||||
NMR representative | Selection criteria: fewest violations | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy,target function Conformers calculated total number: 500 / Conformers submitted total number: 22 |