+Open data
-Basic information
Entry | Database: PDB / ID: 1m8u | ||||||
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Title | Crystal Structure of Bovine gamma-E at 1.65 Ang Resolution | ||||||
Components | gamma-E | ||||||
Keywords | STRUCTURAL PROTEIN / gamma-crystallin / gamma-E | ||||||
Function / homology | Function and homology information structural constituent of eye lens / lens development in camera-type eye / visual perception Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.65 Å | ||||||
Authors | Mayer, C. / Agueznay, N. / Skouri-Panet, F. / Prat, K. / Putilina, T. / Biarrotte-Sorin, S. / Tardieu, A. | ||||||
Citation | Journal: To be Published Title: Crystal Structure of Bovine gamma-E Authors: Mayer, C. / Agueznay, N. / Skouri-Panet, F. / Prat, K. / Putilina, T. / Biarrotte-Sorin, S. / Tardieu, A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1m8u.cif.gz | 55.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1m8u.ent.gz | 38.7 KB | Display | PDB format |
PDBx/mmJSON format | 1m8u.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1m8u_validation.pdf.gz | 423.1 KB | Display | wwPDB validaton report |
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Full document | 1m8u_full_validation.pdf.gz | 426.2 KB | Display | |
Data in XML | 1m8u_validation.xml.gz | 12 KB | Display | |
Data in CIF | 1m8u_validation.cif.gz | 18.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/m8/1m8u ftp://data.pdbj.org/pub/pdb/validation_reports/m8/1m8u | HTTPS FTP |
-Related structure data
Related structure data | 1a5dS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 21062.420 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: extracted from calf eye lens / Source: (natural) Bos taurus (cattle) / References: UniProt: P23005 |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.35 Å3/Da / Density % sol: 47.6 % |
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Crystal grow | Temperature: 277 K / Method: microbatch / pH: 4.5 Details: PEG 3000, sodium acetate, pH 4.5, microbatch, temperature 277K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: BM30A / Wavelength: 0.9797 Å |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Jun 13, 2002 |
Radiation | Monochromator: mirror + double crystal + mirror / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9797 Å / Relative weight: 1 |
Reflection | Resolution: 1.65→28 Å / Num. obs: 20771 / % possible obs: 92 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 2.2 % / Biso Wilson estimate: 11.4 Å2 / Rsym value: 0.051 / Net I/σ(I): 8 |
Reflection shell | Resolution: 1.65→1.74 Å / Redundancy: 1.8 % / Mean I/σ(I) obs: 4.4 / Num. unique all: 1518 / Rsym value: 0.104 / % possible all: 79.1 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: PDB ENTRY 1A5D Resolution: 1.65→20 Å / Cross valid method: THROUGHOUT / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber
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Displacement parameters |
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.65→20 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.65→1.71 Å / Total num. of bins used: 10
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