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Yorodumi- PDB-1lyn: CRYSTAL STRUCTURE AND SUBUNIT DYNAMICS OF THE LYSIN DIMER: EGG EN... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1lyn | ||||||
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Title | CRYSTAL STRUCTURE AND SUBUNIT DYNAMICS OF THE LYSIN DIMER: EGG ENVELOPES DISSOCIATE DIMERS, THE MONOMER IS THE ACTIVE SPECIES | ||||||
Components | SPERM LYSIN | ||||||
Keywords | FERTILIZATION PROTEIN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Haliotis rufescens (red abalone) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.75 Å | ||||||
Authors | Shaw, A. / Vacquier, V.D. / Stout, C.D. | ||||||
Citation | Journal: J.Cell Biol. / Year: 1995 Title: Crystal structure and subunit dynamics of the abalone sperm lysin dimer: egg envelopes dissociate dimers, the monomer is the active species. Authors: Shaw, A. / Fortes, P.A. / Stout, C.D. / Vacquier, V.D. #1: Journal: Science / Year: 1993 Title: The Crystal Structure of Lysin, a Fertilization Protein Authors: Shaw, A. / Mcree, D.E. / Vacquier, V.D. / Stout, C.D. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1lyn.cif.gz | 61.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1lyn.ent.gz | 46.7 KB | Display | PDB format |
PDBx/mmJSON format | 1lyn.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ly/1lyn ftp://data.pdbj.org/pub/pdb/validation_reports/ly/1lyn | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 16295.218 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Haliotis rufescens (red abalone) / References: UniProt: P04552 |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.28 Å3/Da / Density % sol: 46.16 % |
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Crystal grow | *PLUS Method: vapor diffusion |
-Data collection
Diffraction source | Wavelength: 1.5418 Å |
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Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: 1993 |
Radiation | Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 24754 / % possible obs: 93.6 % / Observed criterion σ(I): 0 / Redundancy: 3.2 % / Rmerge(I) obs: 0.054 |
Reflection | *PLUS Highest resolution: 2.6 Å / Rmerge(I) obs: 0.054 |
Reflection shell | *PLUS Highest resolution: 2.6 Å / Lowest resolution: 2.8 Å / Rmerge(I) obs: 0.152 / Mean I/σ(I) obs: 11.3 |
-Processing
Software |
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Refinement | Resolution: 2.75→8 Å / σ(F): 0
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Displacement parameters | Biso mean: 13.2 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.75→8 Å
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Refine LS restraints |
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Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_plane_restr / Dev ideal: 1.73 |