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Open data
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Basic information
Entry | Database: PDB / ID: 1lr3 | ||||||
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Title | Crystal structure of thaumatin at high hydrostatic pressure | ||||||
![]() | Thaumatin I | ||||||
![]() | PLANT PROTEIN / Taste-modifying protein / sweet protein | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Charron, C. / Kadri, A. / Robert, M.C. / Capelle, B. / Giege, R. / Lorber, B. | ||||||
![]() | Journal: J.CRYST.GROWTH / Year: 2002 Title: X-ray diffraction properties of protein crystals prepared in agarose gel under hydrostatic pressure. Authors: Charron, C. / Robert, M.-C. / Capelle, B. / Kadri, A. / Jenner, G. / Giege, R. / Lorber, B. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 51.5 KB | Display | ![]() |
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PDB format | ![]() | 40.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 438.1 KB | Display | ![]() |
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Full document | ![]() | 440.1 KB | Display | |
Data in XML | ![]() | 12.2 KB | Display | |
Data in CIF | ![]() | 17.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1thwS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 22227.059 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() |
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#2: Chemical | ChemComp-TLA / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.82 Å3/Da / Density % sol: 56.41 % | ||||||||||||||||||||
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Crystal grow | Temperature: 293 K / Method: small tubes / pH: 6.5 / Details: tartrate, pH 6.5, SMALL TUBES, temperature 293.0K | ||||||||||||||||||||
Crystal grow | *PLUS Method: unknown | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Apr 24, 2001 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9474 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→30 Å / Num. all: 24544 / Num. obs: 24544 / % possible obs: 99.9 % / Observed criterion σ(I): -3 / Redundancy: 8.7 % / Rsym value: 0.03 |
Reflection shell | Resolution: 1.8→1.86 Å / Num. unique all: 2006 / Rsym value: 0.057 / % possible all: 100 |
Reflection | *PLUS Rmerge(I) obs: 0.03 |
Reflection shell | *PLUS % possible obs: 100 % / Rmerge(I) obs: 0.057 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1THW Resolution: 1.8→30 Å / Isotropic thermal model: isotropic / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 1.8→30 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.8→1.86 Å
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