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- PDB-1lmc: THE CRYSTAL STRUCTURE OF A COMPLEX BETWEEN BULGECIN, A BACTERIAL ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1lmc | |||||||||
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Title | THE CRYSTAL STRUCTURE OF A COMPLEX BETWEEN BULGECIN, A BACTERIAL METABOLITE, AND LYSOZYME FROM THE RAINBOW TROUT | |||||||||
![]() | LYSOZYME | |||||||||
![]() | HYDROLASE (O-GLYCOSYL) | |||||||||
Function / homology | ![]() metabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium / extracellular space Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Karlsen, S. / Hough, E. | |||||||||
![]() | ![]() Title: Structure of a complex between bulgecin, a bacterial metabolite, and lysozyme from the rainbow trout. Authors: Karlsen, S. / Hough, E. #1: ![]() Title: The Crystal Structures of Three Complexes between Chitooligosaccharides and Lysozyme from the Rainbow Trout Authors: Karlsen, S. / Hough, E. #2: ![]() Title: The Refined Crystal Structure of Lysozyme from Rainbow Trout (Oncorhynchus Mykiss) Authors: Karlsen, S. / Eliassen, B.E. / Hansen, L.K. / Larsen, R.L. / Riise, B.W. / Smalaas, A.O. / Hough, E. / Grinde, B. #3: ![]() Title: Structures of Bulgecins, Bacterial Metabolites with Bulge-Inducing Activity Authors: Shinagawa, S. / Kasahara, F. / Wada, Y. / Harada, S. / Asai, M. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 37.8 KB | Display | ![]() |
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PDB format | ![]() | 28.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 801.5 KB | Display | ![]() |
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Full document | ![]() | 808.2 KB | Display | |
Data in XML | ![]() | 10.2 KB | Display | |
Data in CIF | ![]() | 13.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 14303.068 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() |
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#2: Chemical | ChemComp-BUL / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.22 Å3/Da / Density % sol: 61.78 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 277 K / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.5418 Å |
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Detector | Type: ENRAF-NONIUS FAST / Detector: DIFFRACTOMETER / Date: Mar 17, 1994 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 10895 / % possible obs: 86.1 % / Observed criterion σ(I): 3 / Rmerge(I) obs: 0.059 |
Reflection | *PLUS Highest resolution: 2 Å / Lowest resolution: 14.68 Å / Rmerge(I) obs: 0.059 |
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Processing
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Refinement | Resolution: 2→8 Å / σ(F): 3 /
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Refinement step | Cycle: LAST / Resolution: 2→8 Å
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Refine LS restraints |
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