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Yorodumi- PDB-1lif: THE ADIPOCYTE LIPID-BINDING PROTEIN AT 1.6 ANGSTROMS RESOLUTION: ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1lif | ||||||
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Title | THE ADIPOCYTE LIPID-BINDING PROTEIN AT 1.6 ANGSTROMS RESOLUTION: CRYSTAL STRUCTURES OF THE APOPROTEIN AND WITH BOUND SATURATED AND UNSATURATED FATTY ACIDS | ||||||
Components | ADIPOCYTE LIPID-BINDING PROTEIN | ||||||
Keywords | LIPID BINDING PROTEIN / LIPID-BINDING PROTEIN | ||||||
Function / homology | Function and homology information Triglyceride catabolism / hormone receptor binding / long-chain fatty acid transmembrane transporter activity / cellular response to lithium ion / long-chain fatty acid binding / white fat cell differentiation / fatty acid transport / long-chain fatty acid transport / brown fat cell differentiation / fatty acid metabolic process ...Triglyceride catabolism / hormone receptor binding / long-chain fatty acid transmembrane transporter activity / cellular response to lithium ion / long-chain fatty acid binding / white fat cell differentiation / fatty acid transport / long-chain fatty acid transport / brown fat cell differentiation / fatty acid metabolic process / cholesterol homeostasis / fatty acid binding / response to bacterium / positive regulation of inflammatory response / cellular response to tumor necrosis factor / positive regulation of cold-induced thermogenesis / negative regulation of DNA-templated transcription / positive regulation of cell population proliferation / nucleoplasm / nucleus / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | Mus musculus (house mouse) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.6 Å | ||||||
Authors | Zu, Z. / Bernlohr, D.A. / Banaszak, L.J. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 1993 Title: The adipocyte lipid-binding protein at 1.6-A resolution. Crystal structures of the apoprotein and with bound saturated and unsaturated fatty acids. Authors: Xu, Z. / Bernlohr, D.A. / Banaszak, L.J. #1: Journal: Biochemistry / Year: 1992 Title: Crystal Structure of Recombinant Murine Adipocyte Lipid-Binding Protein Authors: Xu, Z. / Bernlohr, D.A. / Banaszak, L.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1lif.cif.gz | 39.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1lif.ent.gz | 27.4 KB | Display | PDB format |
PDBx/mmJSON format | 1lif.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1lif_validation.pdf.gz | 411.9 KB | Display | wwPDB validaton report |
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Full document | 1lif_full_validation.pdf.gz | 414.1 KB | Display | |
Data in XML | 1lif_validation.xml.gz | 4.5 KB | Display | |
Data in CIF | 1lif_validation.cif.gz | 6.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/li/1lif ftp://data.pdbj.org/pub/pdb/validation_reports/li/1lif | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 14539.688 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / Production host: Escherichia coli (E. coli) / References: UniProt: P04117 |
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#2: Chemical | ChemComp-STE / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.25 Å3/Da / Density % sol: 45.38 % | ||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 19 ℃ / pH: 6.9 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.48 Å / Num. obs: 19986 / % possible obs: 65.1 % / Num. measured all: 65555 / Rmerge(I) obs: 0.0286 |
-Processing
Software |
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Refinement | Rfactor Rwork: 0.18 / Rfactor obs: 0.18 / Highest resolution: 1.6 Å Details: LYS 9, LYS 21, MET 35, LYS 37, LYS 79, AND LYS 120 POSITIONS ARE NOT ACCURATE. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.6 Å
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Refine LS restraints |
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Refinement | *PLUS Rfactor obs: 0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d / Dev ideal: 2.8 |