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- PDB-1lhm: THE CRYSTAL STRUCTURE OF A MUTANT LYSOZYME C77(SLASH)95A WITH INC... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1lhm | ||||||
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Title | THE CRYSTAL STRUCTURE OF A MUTANT LYSOZYME C77(SLASH)95A WITH INCREASED SECRETION EFFICIENCY IN YEAST | ||||||
![]() | HUMAN LYSOZYME![]() | ||||||
![]() | HYDROLASE (O-GLYCOSYL) | ||||||
Function / homology | ![]() antimicrobial humoral response / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Inaka, K. / Matsushima, M. | ||||||
![]() | ![]() Title: The crystal structure of a mutant human lysozyme C77/95A with increased secretion efficiency in yeast. Authors: Inaka, K. / Taniyama, Y. / Kikuchi, M. / Morikawa, K. / Matsushima, M. #1: ![]() Title: Role of Disulfide Bonds in Folding and Secretion of Human Lysozyme in Saccharomyces Cerevisiae Authors: Taniyama, Y. / Yamamoto, Y. / Kikuchi, N.Nakao M. / Ikehara, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 34.4 KB | Display | ![]() |
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PDB format | ![]() | 26.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Atom site foot note | 1: THE CYS 77 - CYS 95 DISULFIDE BOND HAS BEEN DELETED IN THIS ENTRY. |
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Components
#1: Protein | ![]() Mass: 14656.562 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / ![]() |
Compound details | THE CYS 77 - CYS 95 DISULFIDE BOND HAS BEEN DELETED IN THIS ENTRY. |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.98 Å3/Da / Density % sol: 37.86 % | ||||||||||||||||||||||||||||
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Crystal grow![]() | *PLUS Temperature: 13.0 ℃ / Method: unknown / pH: 6 | ||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.76 Å / Lowest resolution: 9999 Å / Num. obs: 11241 / Num. measured all: 78240 / Rmerge(I) obs: 0.0834 |
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Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||
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Refinement | Rfactor obs: 0.16 / Highest resolution: 1.8 Å | ||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.8 Å
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Software | *PLUS Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 1.8 Å / Lowest resolution: 5 Å / Num. reflection obs: 10370 / Rfactor obs: 0.163 / Rfactor Rwork![]() | ||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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