Mass: 18.015 Da / Num. of mol.: 229 / Source method: isolated from a natural source / Formula: H2O
Compound details
MURAMOYL-PENTAPEPTIDE CARBOXYPEPTIDASE HYDROLYSES INSOLUBLE PEPTIDOGLYCAN CLEAVAGE OF UDP-N- ...MURAMOYL-PENTAPEPTIDE CARBOXYPEPTIDASE HYDROLYSES INSOLUBLE PEPTIDOGLYCAN CLEAVAGE OF UDP-N-ACETYLMURAMOYL-L-ALANYL-D- GAMMA-GLUTAMYL-CARBOXY-L-LYSYL-D-ALANYL-|-D-ALANINE.
Sequence details
THE FIRST AMINO ACID OF THE NATIVE PROTEIN IS ASP 1 WHICH IS PARTIALLY BLOCKED IN THIS STRUCTURE AS ...THE FIRST AMINO ACID OF THE NATIVE PROTEIN IS ASP 1 WHICH IS PARTIALLY BLOCKED IN THIS STRUCTURE AS A RESULT OF THE CYCLIZATION OF THE FIRST TWO AMINO ACIDS INTO ANHYDROASPARTYLGLYCINE.
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Experimental details
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Experiment
Experiment
Method: X-RAY DIFFRACTION
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Sample preparation
Crystal
Density Matthews: 2.17 Å3/Da / Density % sol: 43.39 %
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Data collection
Radiation
Scattering type: x-ray
Radiation wavelength
Relative weight: 1
Reflection
Resolution: 1.8→30 Å / Num. obs: 15460 / % possible obs: 100 % / Observed criterion σ(I): 0
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Processing
Software
Name: PROLSQ / Classification: refinement
Refinement
Resolution: 1.8→6 Å / σ(F): 2 Details: AMINO ACIDS 43 - 109 ARE SIMILAR TO AMINO ACIDS 194 - 261 OF B. SUBTILIS AUTOLYSIN.
Rfactor
Num. reflection
% reflection
Rwork
0.164
-
-
obs
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12633
84 %
Refinement step
Cycle: LAST / Resolution: 1.8→6 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
1555
0
1
229
1785
Refine LS restraints
Refine-ID
Type
Dev ideal
X-RAY DIFFRACTION
p_bond_d
0.016
X-RAY DIFFRACTION
p_angle_d
0.034
X-RAY DIFFRACTION
p_angle_deg
X-RAY DIFFRACTION
p_planar_d
X-RAY DIFFRACTION
p_hb_or_metal_coord
X-RAY DIFFRACTION
p_mcbond_it
X-RAY DIFFRACTION
p_mcangle_it
X-RAY DIFFRACTION
p_scbond_it
X-RAY DIFFRACTION
p_scangle_it
X-RAY DIFFRACTION
p_plane_restr
X-RAY DIFFRACTION
p_chiral_restr
X-RAY DIFFRACTION
p_singtor_nbd
X-RAY DIFFRACTION
p_multtor_nbd
X-RAY DIFFRACTION
p_xhyhbond_nbd
X-RAY DIFFRACTION
p_xyhbond_nbd
X-RAY DIFFRACTION
p_planar_tor
X-RAY DIFFRACTION
p_staggered_tor
X-RAY DIFFRACTION
p_orthonormal_tor
X-RAY DIFFRACTION
p_transverse_tor
X-RAY DIFFRACTION
p_special_tor
+
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