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Yorodumi- PDB-1jzc: THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA P... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1jzc | ||||||||||||||||||||
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Title | THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA | ||||||||||||||||||||
Components | 5'-R(*Keywords | RNA / Brome Mosaic Virus / BMV / triloop / Replication / Promoter / RNA polymerase | Function / homology | RNA / RNA (> 10) | Function and homology information Method | SOLUTION NMR / simulated annealing restrained molecular dynamics | Model type details | minimized average | Authors | Kim, C.-H. / Kao, C.C. | Citation | Journal: RNA / Year: 2001 Title: A mutant viral RNA promoter with an altered conformation retains efficient recognition by a viral RNA replicase through a solution-exposed adenine Authors: Kim, C.-H. / Kao, C.C. #1: Journal: Nat.Struct.Biol. / Year: 2000 Title: RNA motifs that determine specificity between a viral replicase and its promoter Authors: Kim, C.-H. / Kao, C.C. / Tinoco Jr., I. #2: Journal: J.Mol.Biol. / Year: 2001 Title: Structural and Thermodynamic Studies on Mutant RNA motifs that impair the Specificity between a Viral Replicase and its Promoter Authors: Kim, C.-H. / Tinoco Jr., I. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1jzc.cif.gz | 14.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1jzc.ent.gz | 10.4 KB | Display | PDB format |
PDBx/mmJSON format | 1jzc.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/jz/1jzc ftp://data.pdbj.org/pub/pdb/validation_reports/jz/1jzc | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 4172.541 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: This sequence is a mutant triloop of which the wild type is naturally occuring in Brome Mosaic Virus genomic RNA |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing restrained molecular dynamics / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: a strucutre averaged over these 17 calculated structures. Conformers calculated total number: 17 / Conformers submitted total number: 1 |