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- PDB-1jzc: THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA P... -
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Basic information
Entry | Database: PDB / ID: 1jzc | ||||||||||||||||||||
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Title | THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA | ||||||||||||||||||||
![]() | 5'-R(*![]() RNA / Brome Mosaic Virus / BMV / triloop / Replication / Promoter / RNA polymerase | Function / homology | RNA / RNA (> 10) | ![]() Method | SOLUTION NMR / simulated annealing restrained molecular dynamics | Model type details | minimized average | ![]() Kim, C.-H. / Kao, C.C. | ![]() ![]() Title: A mutant viral RNA promoter with an altered conformation retains efficient recognition by a viral RNA replicase through a solution-exposed adenine Authors: Kim, C.-H. / Kao, C.C. #1: ![]() Title: RNA motifs that determine specificity between a viral replicase and its promoter Authors: Kim, C.-H. / Kao, C.C. / Tinoco Jr., I. #2: ![]() Title: Structural and Thermodynamic Studies on Mutant RNA motifs that impair the Specificity between a Viral Replicase and its Promoter Authors: Kim, C.-H. / Tinoco Jr., I. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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PDBx/mmCIF format | ![]() | 16.5 KB | Display | ![]() |
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PDB format | ![]() | 10.2 KB | Display | ![]() |
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-Validation report
Summary document | ![]() | 292.9 KB | Display | ![]() |
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Full document | ![]() | 292.9 KB | Display | |
Data in XML | ![]() | 1.8 KB | Display | |
Data in CIF | ![]() | 2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: RNA chain | Mass: 4172.541 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: This sequence is a mutant triloop of which the wild type is naturally occuring in Brome Mosaic Virus genomic RNA |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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Processing
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Refinement | Method: simulated annealing restrained molecular dynamics / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: a strucutre averaged over these 17 calculated structures. Conformers calculated total number: 17 / Conformers submitted total number: 1 |