+Open data
-Basic information
Entry | Database: PDB / ID: 1jmp | ||||||
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Title | Solution Structure of the Viscotoxin B | ||||||
Components | viscotoxin B | ||||||
Keywords | TOXIN / THIONIN / VISCOTOXIN / VISCUM ALBUM | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Viscum album (European mistletoe) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Coulon, A. / Mosbah, A. / Bernard, C. / Rouge, P. / Urech, K. / Darbon, H. | ||||||
Citation | Journal: Biochem.J. / Year: 2003 Title: Comparative membrane interaction study of viscotoxins A3, A2 and B from mistletoe (Viscum album) and connections with their structures Authors: Coulon, A. / Mosbah, A. / Lopez, A. / Sautereau, A.M. / Schaller, G. / Urech, K. / Rouge, P. / Darbon, H. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1jmp.cif.gz | 256.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1jmp.ent.gz | 221.9 KB | Display | PDB format |
PDBx/mmJSON format | 1jmp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/jm/1jmp ftp://data.pdbj.org/pub/pdb/validation_reports/jm/1jmp | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 4864.550 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Viscum album (European mistletoe) / Production host: Escherichia coli (E. coli) / References: UniProt: P08943 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Sample conditions | pH: 5 / Temperature: 283 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 500 MHz |
-Processing
NMR software | Name: CNS / Version: 1 / Developer: Brunger / Classification: refinement |
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NMR representative | Selection criteria: fewest violations,lowest energy |
NMR ensemble | Conformer selection criteria: back calculated data agree with experimental NOESY spectrum, structures with acceptable covalent geometry, structures with favorable non-bond energy Conformers calculated total number: 40 / Conformers submitted total number: 20 |