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- PDB-1jfh: STRUCTURE OF A PANCREATIC ALPHA-AMYLASE BOUND TO A SUBSTRATE ANAL... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1jfh | ||||||||||||
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Title | STRUCTURE OF A PANCREATIC ALPHA-AMYLASE BOUND TO A SUBSTRATE ANALOGUE AT 2.03 ANGSTROM RESOLUTION | ||||||||||||
![]() | ALPHA-AMYLASE | ||||||||||||
![]() | HYDROLASE / O-GLYCOSYL / ALPHA-AMYLASE / METHYL 4 / 4'-DITHIO-ALPHA-MALTOTRIOSIDE | ||||||||||||
Function / homology | ![]() alpha-amylase / alpha-amylase activity / chloride ion binding / carbohydrate catabolic process / carbohydrate metabolic process / calcium ion binding / extracellular space Similarity search - Function | ||||||||||||
Biological species | ![]() ![]() | ||||||||||||
Method | ![]() | ||||||||||||
![]() | Qian, M. / Payan, F. | ||||||||||||
![]() | ![]() Title: Structure of a pancreatic alpha-amylase bound to a substrate analogue at 2.03 A resolution. Authors: Qian, M. / Spinelli, S. / Driguez, H. / Payan, F. #1: ![]() Title: Crystal Structure of Pig Pancreatic Alpha-Amylase Isoenzyme II, in Complex with the Carbohydrate Inhibitor Acarbose Authors: Gilles, C. / Astier, J.P. / Marchis-Mouren, G. / Cambillau, C. / Payan, F. #2: ![]() Title: Carbohydrate Binding Sites in a Pancreatic Alpha-Amylase-Substrate Complex, Derived from X-Ray Structure Analysis at 2.1 A Resolution Authors: Qian, M. / Haser, R. / Payan, F. #3: ![]() Title: The Active Center of a Mammalian Alpha-Amylase. Structure of the Complex of a Pancreatic Alpha-Amylase with a Carbohydrate Inhibitor Refined to 2.2-A Resolution Authors: Qian, M. / Haser, R. / Buisson, G. / Duee, E. / Payan, F. #4: ![]() Title: Structure and Molecular Model Refinement of Pig Pancreatic Alpha-Amylase at 2.1 A Resolution Authors: Qian, M. / Haser, R. / Payan, F. | ||||||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 121.6 KB | Display | ![]() |
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PDB format | ![]() | 91.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 544.8 KB | Display | ![]() |
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Full document | ![]() | 546.6 KB | Display | |
Data in XML | ![]() | 11.1 KB | Display | |
Data in CIF | ![]() | 18.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
-Protein , 1 types, 1 molecules A
#1: Protein | Mass: 55432.762 Da / Num. of mol.: 1 / Source method: isolated from a natural source Details: COMPLEXED WITH METHYL 4,4'-DITHIO-ALPHA-MALTOTRIOSIDE Source: (natural) ![]() ![]() |
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-Sugars , 2 types, 3 molecules
#2: Polysaccharide | 4-S-methyl-4-thio-alpha-D-glucopyranose-(1-4)-methyl 4-thio-alpha-D-glucopyranoside Type: oligosaccharide / Mass: 402.481 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source |
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#3: Polysaccharide | Type: oligosaccharide / Mass: 374.428 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source |
-Non-polymers , 4 types, 386 molecules 






#4: Chemical | ChemComp-CL / |
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#5: Chemical | ChemComp-HG / |
#6: Chemical | ChemComp-CA / |
#7: Water | ChemComp-HOH / |
-Details
Has protein modification | Y |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.3 Å3/Da / Density % sol: 45 % |
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Crystal grow | *PLUS Method: unknown |
-Data collection
Diffraction source | Wavelength: 1.5418 |
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Detector | Type: MAR scanner 180 mm plate / Detector: IMAGE PLATE |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 33718 / % possible obs: 99.4 % / Observed criterion σ(I): 1 / Redundancy: 9.5 % / Rmerge(I) obs: 0.057 |
Reflection | *PLUS Highest resolution: 2.03 Å / Num. measured all: 322368 |
Reflection shell | *PLUS % possible obs: 99.8 % / Rmerge(I) obs: 0.139 |
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Processing
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Refinement | Resolution: 2.03→35 Å / σ(F): 0
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Refine analyze | Luzzati coordinate error obs: 0.2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.03→35 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |