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Yorodumi- PDB-1ifc: REFINEMENT OF THE STRUCTURE OF RECOMBINANT RAT INTESTINAL FATTY A... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ifc | ||||||
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Title | REFINEMENT OF THE STRUCTURE OF RECOMBINANT RAT INTESTINAL FATTY ACID-BINDING APOPROTEIN AT 1.2 ANGSTROMS RESOLUTION | ||||||
Components | INTESTINAL FATTY ACID BINDING PROTEIN | ||||||
Keywords | LIPID BINDING PROTEIN / LIPID-BINDING PROTEIN | ||||||
Function / homology | Function and homology information Triglyceride catabolism / intestinal lipid absorption / apical cortex / intestinal absorption / long-chain fatty acid transmembrane transporter activity / long-chain fatty acid binding / long-chain fatty acid transport / microvillus / fatty acid transport / fatty acid metabolic process ...Triglyceride catabolism / intestinal lipid absorption / apical cortex / intestinal absorption / long-chain fatty acid transmembrane transporter activity / long-chain fatty acid binding / long-chain fatty acid transport / microvillus / fatty acid transport / fatty acid metabolic process / fatty acid binding / nucleus / cytosol Similarity search - Function | ||||||
Biological species | Rattus norvegicus (Norway rat) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.19 Å | ||||||
Authors | Scapin, G. / Gordon, J.I. / Sacchettini, J.C. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 1992 Title: Refinement of the structure of recombinant rat intestinal fatty acid-binding apoprotein at 1.2-A resolution. Authors: Scapin, G. / Gordon, J.I. / Sacchettini, J.C. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ifc.cif.gz | 60.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ifc.ent.gz | 47.2 KB | Display | PDB format |
PDBx/mmJSON format | 1ifc.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/if/1ifc ftp://data.pdbj.org/pub/pdb/validation_reports/if/1ifc | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 15146.212 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Rattus norvegicus (Norway rat) / References: UniProt: P02693 |
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#2: Water | ChemComp-HOH / |
Compound details | TURN B5 IS TYPE II' IN FIRST STRUCTURE, TYPE III' IN SECOND STRUCTURE. |
Sequence details | SEQUENCE ADVISORY NOTICE: DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. SWISS-PROT ENTRY NAME: ...SEQUENCE ADVISORY NOTICE: DIFFERENCE |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 1.91 Å3/Da / Density % sol: 35.45 % | ||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 7.3 / Method: microdialysis | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.187 Å / Lowest resolution: 2.035 Å / Num. obs: 34734 / % possible obs: 95.3 % / Num. measured all: 198335 / Rmerge(I) obs: 0.0447 |
-Processing
Software |
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Refinement | Resolution: 1.19→9 Å /
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Refinement step | Cycle: LAST / Resolution: 1.19→9 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.19 Å / Lowest resolution: 9 Å / Rfactor obs: 0.169 / Num. reflection obs: 34290 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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