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Yorodumi- PDB-1hpl: HORSE PANCREATIC LIPASE. THE CRYSTAL STRUCTURE AT 2.3 ANGSTROMS R... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1hpl | ||||||
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Title | HORSE PANCREATIC LIPASE. THE CRYSTAL STRUCTURE AT 2.3 ANGSTROMS RESOLUTION | ||||||
Components | LIPASE | ||||||
Keywords | HYDROLASE(CARBOXYLIC ESTERASE) | ||||||
Function / homology | Function and homology information lipase activity / triacylglycerol lipase / triglyceride lipase activity / lipid catabolic process / extracellular space / metal ion binding Similarity search - Function | ||||||
Biological species | Equus caballus (horse) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.3 Å | ||||||
Authors | Bourne, Y. / Cambillau, C. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1994 Title: Horse pancreatic lipase. The crystal structure refined at 2.3 A resolution. Authors: Bourne, Y. / Martinez, C. / Kerfelec, B. / Lombardo, D. / Chapus, C. / Cambillau, C. #1: Journal: J.Mol.Biol. / Year: 1989 Title: Crystallization and Preliminary X-Ray Study of Horse Pancreatic Lipase Authors: Lombardo, D. / Chapus, C. / Bourne, Y. / Cambillau, C. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1hpl.cif.gz | 194.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1hpl.ent.gz | 161.2 KB | Display | PDB format |
PDBx/mmJSON format | 1hpl.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hp/1hpl ftp://data.pdbj.org/pub/pdb/validation_reports/hp/1hpl | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO A 16 / 2: CIS PROLINE - PRO A 211 / 3: CIS PROLINE - PRO A 298 4: SER A 333 - ASN A 334 OMEGA =326.11 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 5: CIS PROLINE - PRO B 16 / 6: CIS PROLINE - PRO B 211 / 7: CIS PROLINE - PRO B 298 8: SER B 333 - ASN B 334 OMEGA =298.62 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION | ||||||||
Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.9999, -0.0011, 0.0029), Vector: |
-Components
#1: Protein | Mass: 49759.441 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Equus caballus (horse) / References: UniProt: P29183, triacylglycerol lipase #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.83 Å3/Da / Density % sol: 56.54 % | ||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 20 ℃ / pH: 5.6 / Method: vapor diffusion, hanging drop / Details: referred to J.Mol.Biol. 205.259-261 | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.3 Å / Num. obs: 45644 / % possible obs: 86.3 % / Num. measured all: 145844 / Rmerge(I) obs: 0.063 |
Reflection shell | *PLUS Highest resolution: 2.3 Å / Lowest resolution: 2.4 Å / % possible obs: 48 % |
-Processing
Software |
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Refinement | Resolution: 2.3→6 Å / Rfactor Rwork: 0.159 / Rfactor obs: 0.159 / σ(F): 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.3→6 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.159 / Rfactor Rwork: 0.159 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d / Dev ideal: 3.1 |