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- PDB-1hng: CRYSTAL STRUCTURE AT 2.8 ANGSTROMS RESOLUTION OF A SOLUBLE FORM O... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1hng | ||||||
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Title | CRYSTAL STRUCTURE AT 2.8 ANGSTROMS RESOLUTION OF A SOLUBLE FORM OF THE CELL ADHESION MOLECULE CD2 | ||||||
![]() | CD2 | ||||||
![]() | T LYMPHOCYTE ADHESION GLYCOPROTEIN | ||||||
Function / homology | ![]() natural killer cell activation / heterotypic cell-cell adhesion / natural killer cell mediated cytotoxicity / positive regulation of interleukin-8 production / cell-cell adhesion / cytoplasmic side of plasma membrane / receptor tyrosine kinase binding / positive regulation of type II interferon production / positive regulation of tumor necrosis factor production / cell-cell junction ...natural killer cell activation / heterotypic cell-cell adhesion / natural killer cell mediated cytotoxicity / positive regulation of interleukin-8 production / cell-cell adhesion / cytoplasmic side of plasma membrane / receptor tyrosine kinase binding / positive regulation of type II interferon production / positive regulation of tumor necrosis factor production / cell-cell junction / external side of plasma membrane / signaling receptor binding / protein kinase binding / cell surface / Golgi apparatus / protein-containing complex / extracellular region / nucleoplasm / identical protein binding / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Jones, E.Y. / Davis, S.J. / Williams, A.F. / Harlos, K. / Stuart, D.I. | ||||||
![]() | ![]() Title: Crystal structure at 2.8 A resolution of a soluble form of the cell adhesion molecule CD2. Authors: Jones, E.Y. / Davis, S.J. / Williams, A.F. / Harlos, K. / Stuart, D.I. #1: ![]() Title: Ligand Binding by the Immunoglobulin Superfamily Recognition Molecule Cd2 is Glycosylation Independent Authors: Davis, S.J. / Davies, E.A. / Barclay, A.N. / Daenke, S. / Bodian, D.L. / Jones, E.Y. / Stuart, D.I. / Butters, T.D. / Dwek, R.A. / Van Der Merwe, P.A. #2: ![]() Title: Expression of Soluble Recombinant Glycoproteins with Predefined Glycosylation: Application to the Crystallization of the T-Cell Glycoprotein Cd2 Authors: Davis, S.J. / Puklavec, M.J. / Ashford, D.A. / Harlos, K. / Jones, E.Y. / Stuart, D.I. / Williams, A.F. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 78.2 KB | Display | ![]() |
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PDB format | ![]() | 61.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 20138.020 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Nonpolymer details | FOUR NAG (N-ACETYL GLUCOSAMIN | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.35 Å3/Da / Density % sol: 63.24 % | ||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 7.4 / Method: vapor diffusion, sitting drop | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | Num. obs: 13432 / % possible obs: 96 % |
Reflection | *PLUS Num. measured all: 51452 / Rmerge(I) obs: 0.126 |
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Processing
Software |
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Refinement | Resolution: 2.8→20 Å /
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Refinement step | Cycle: LAST / Resolution: 2.8→20 Å
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Software | *PLUS Name: ![]() | ||||||||||||
Refinement | *PLUS Rfactor obs: 0.215 / Rfactor Rwork: 0.215 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS | ||||||||||||
Refine LS restraints | *PLUS Type: x_bond_d / Dev ideal: 0.015 |