[English] 日本語
![](img/lk-miru.gif)
- PDB-1hmo: THE STRUCTURE OF DEOXY AND OXY HEMERYTHRIN AT 2.0 ANGSTROMS RESOLUTION -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1hmo | ||||||
---|---|---|---|---|---|---|---|
Title | THE STRUCTURE OF DEOXY AND OXY HEMERYTHRIN AT 2.0 ANGSTROMS RESOLUTION | ||||||
![]() | HEMERYTHRIN | ||||||
![]() | OXYGEN TRANSPORT | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Holmes, M.A. / Letrong, I. / Turley, S. / Sieker, L.C. / Stenkamp, R.E. | ||||||
![]() | ![]() Title: Structures of deoxy and oxy hemerythrin at 2.0 A resolution. Authors: Holmes, M.A. / Le Trong, I. / Turley, S. / Sieker, L.C. / Stenkamp, R.E. #1: ![]() Title: Active Site Structures of Deoxyhemerythrin and Oxyhemerythrin Authors: Stenkamp, R.E. / Sieker, L.C. / Jensen, L.H. / Mccallum, J.D. / Sanders-Loehr, J. #2: ![]() Title: Binuclear Iron Complexes in Methemerythrin and Azidomethemerythrin at 2.0-Angstroms Resolution Authors: Stenkamp, R.E. / Sieker, L.C. / Jensen, L.H. #3: ![]() Title: Adjustment of Restraints in the Refinement of Methemerythrin and Azidomethemerythrin at 2.0 Angstroms Resolution. Authors: Stenkamp, R.E. / Sieker, L.C. / Jensen, L.H. #4: ![]() Title: Restrained Least-Squares Refinement of Themiste Dyscritum Methydroxohemerythrin at 2.0 Angstroms Resolution Authors: Stenkamp, R.E. / Sieker, L.C. / Jensen, L.H. #5: ![]() Title: Structure of the Binuclear Iron Complex in Metazidohaemerythrin from Themiste Dyscritum at 2.2 Angstroms Resolution Authors: Stenkamp, R.E. / Sieker, L.C. / Jensen, L.H. / Sanders-Loehr, J. #6: ![]() Title: Amino Acid Sequence of Hemerythrin from Themiste Dyscritum. Authors: Stenkamp, R.E. / Lammers, P.J. / Brimhall, B. / Hermodson, M.A. #7: ![]() Title: Crystallographic Studies of Azide, Thiocyanate and Perchlorate Complexes of Methemerythrin Authors: Stenkamp, R.E. / Sieker, L.C. / Jensen, L.H. #8: ![]() Title: Structure of Methemerythrin at 2.8-Angstroms Resolution. Computer Graphics Fit of an Averaged Electron Density Map Authors: Stenkamp, R.E. / Sieker, L.C. / Jensen, L.H. / Mcqueenjunior, J.E. #9: ![]() Title: Structure of Methemerythrin at 5 Angstroms Resolution Authors: Stenkamp, R.E. / Sieker, L.C. / Jensen, L.H. / Loehr, J.S. #10: ![]() Title: Structure of the Iron Complex in Methemerythrin Authors: Stenkamp, R.E. / Sieker, L.C. / Jensen, L.H. #11: ![]() Title: An X-Ray Crystallographic Study of Hemerythrin Authors: Loehr, J.S. / Meyerhoff, K.N. / Sieker, L.C. / Jensen, L.H. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 112.4 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 87.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 460.2 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 468.6 KB | Display | |
Data in XML | ![]() | 22.3 KB | Display | |
Data in CIF | ![]() | 31.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
2 | ![]()
| ||||||||
3 | ![]()
| ||||||||
Unit cell |
| ||||||||
Atom site foot note | 1: HYDROGEN BONDING WOULD ARGUE FOR INTERCHANGING THE SIDECHAIN N AND O ATOMS OF ASN 40 AND GLN 59. 2: SERINE 64 IS ACETYLATED. / 3: PRO 7 OF EACH CHAIN IS A CIS PROLINE. |
-
Components
#1: Protein | Mass: 13368.996 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() #2: Chemical | ChemComp-ACE / #3: Chemical | ChemComp-FEO / #4: Chemical | ChemComp-OXY / #5: Water | ChemComp-HOH / | Nonpolymer details | THE BINUCLEAR IRON COMPLEX (DESIGNATED FEO BELOW) CONSISTS OF TWO FE ATOMS BRIDGED BY A MU-OXYGEN ...THE BINUCLEAR IRON COMPLEX (DESIGNATED | |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.84 Å3/Da / Density % sol: 56.65 % | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Crystal grow | *PLUS Temperature: 4 ℃ / pH: 7.5 / Method: microdialysis | ||||||||||||||||||||
Components of the solutions | *PLUS
|
-Data collection
Radiation | Scattering type: x-ray |
---|---|
Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2 Å / Observed criterion σ(F): 2 / Rmerge F obs: 0.029 |
-
Processing
Software | Name: PROFFT / Classification: refinement | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 2→10 Å /
| ||||||||||||
Refinement step | Cycle: LAST / Resolution: 2→10 Å
| ||||||||||||
Refinement | *PLUS Rfactor obs: 0.173 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS | ||||||||||||
Refine LS restraints | *PLUS
|