SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN ... SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED.
Mass: 18.015 Da / Num. of mol.: 214 / Source method: isolated from a natural source / Formula: H2O
Compound details
CONVERTS MESO-2,6-DIAMINOHEPTANEDIOATE TO L-LYSINE AND CO(2). REQUIRES PYRIDOXAL PHOSPHATE AS A ...CONVERTS MESO-2,6-DIAMINOHEPTANEDIOATE TO L-LYSINE AND CO(2). REQUIRES PYRIDOXAL PHOSPHATE AS A COFACTOR. MEMBER OF THE LYSINE BIOSYNTHESIS PATHWAY AT THE LAST STEP OF LYSINE SYNTHESIS.
Sequence details
RV1293, INITIAL METHIONINE FROM EXPRESSION CONSTRUCT
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Experimental details
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Experiment
Experiment
Method: X-RAY DIFFRACTION / Number of used crystals: 1
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Sample preparation
Crystal
Density Matthews: 4.1 Å3/Da / Density % sol: 70 %
Crystal grow
Method: vapor diffusion, hanging drop / pH: 6.5 Details: 4 UL HANGING DROPS (2 UL OF DAPDC 10 MG/ML CONTAINING 5MM OF LYSINE COMBINED WITH 2 UL OF WELL SOLUTION) WERE EQUILIBRATED AGAINST 500 UL OF WELL SOLUTION (24% PEG-MME 5K, 0.1M MES BUFFER ...Details: 4 UL HANGING DROPS (2 UL OF DAPDC 10 MG/ML CONTAINING 5MM OF LYSINE COMBINED WITH 2 UL OF WELL SOLUTION) WERE EQUILIBRATED AGAINST 500 UL OF WELL SOLUTION (24% PEG-MME 5K, 0.1M MES BUFFER PH6.3 AND 60 MM AMMONIUM SULFATE), pH 6.50
Method to determine structure: MAD / Resolution: 2.8→25 Å / Cor.coef. Fo:Fc: 0.939 / Cor.coef. Fo:Fc free: 0.899 / SU B: 11.89 / SU ML: 0.223 / Cross valid method: THROUGHOUT / ESU R: 0.496 / ESU R Free: 0.309 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.ATOM OXT OF A 447 AND B 446 WERE REMOVED TO INDICATE THAT THE CHAINS CONTINUE BEYOND RESIDUE 447.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.248
1886
5 %
RANDOM
Rwork
0.193
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obs
0.195
35855
100 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: BABINET MODEL WITH MASK