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- PDB-1gio: NMR SOLUTION STRUCTURE OF BOVINE ANGIOGENIN, 10 STRUCTURES -

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Entry
Database: PDB / ID: 1gio
TitleNMR SOLUTION STRUCTURE OF BOVINE ANGIOGENIN, 10 STRUCTURES
ComponentsANGIOGENIN
KeywordsHYDROLASE ANGIOGENESIS / ENDORIBONUCLEASE
Function / homology
Function and homology information


activation of phospholipase A2 activity / angiogenin-PRI complex / diacylglycerol biosynthetic process / Hydrolases; Acting on ester bonds; Endoribonucleases producing 3'-phosphomonoesters / rRNA transcription / : / basement membrane / RNA nuclease activity / ovarian follicle development / positive regulation of endothelial cell proliferation ...activation of phospholipase A2 activity / angiogenin-PRI complex / diacylglycerol biosynthetic process / Hydrolases; Acting on ester bonds; Endoribonucleases producing 3'-phosphomonoesters / rRNA transcription / : / basement membrane / RNA nuclease activity / ovarian follicle development / positive regulation of endothelial cell proliferation / actin filament polymerization / positive regulation of protein secretion / negative regulation of smooth muscle cell proliferation / antimicrobial humoral immune response mediated by antimicrobial peptide / heparin binding / actin binding / antibacterial humoral response / growth cone / cytoplasmic vesicle / angiogenesis / endonuclease activity / cell differentiation / negative regulation of translation / response to hypoxia / defense response to Gram-positive bacterium / copper ion binding / innate immune response / signaling receptor binding / neuronal cell body / nucleolus / DNA binding / extracellular space / nucleus
Similarity search - Function
P-30 Protein / Ribonuclease A-like domain / Pancreatic ribonuclease / Ribonuclease A, active site / Ribonuclease A-domain / Ribonuclease A-like domain superfamily / Pancreatic ribonuclease / Pancreatic ribonuclease family signature. / Pancreatic ribonuclease / Roll / Alpha Beta
Similarity search - Domain/homology
Biological speciesBos taurus (cattle)
MethodSOLUTION NMR
AuthorsLequin, O. / Albaret, C. / Bontems, F. / Spik, G. / Lallemand, J.Y.
Citation
Journal: Biochemistry / Year: 1996
Title: Solution structure of bovine angiogenin by 1H nuclear magnetic resonance spectroscopy.
Authors: Lequin, O. / Albaret, C. / Bontems, F. / Spik, G. / Lallemand, J.Y.
#1: Journal: Eur.J.Biochem. / Year: 1994
Title: Proton Resonance Assignments and Secondary Structure of Bovine Angiogenin
Authors: Reisdorf, C. / Abergel, D. / Bontems, F. / Lallemand, J.Y. / Decottignies, J.P. / Spik, G.
History
DepositionApr 12, 1996Processing site: BNL
Revision 1.0Dec 7, 1996Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Feb 23, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: ANGIOGENIN


Theoretical massNumber of molelcules
Total (without water)14,6221
Polymers14,6221
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)10 / -
Representative

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Components

#1: Protein ANGIOGENIN


Mass: 14621.514 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) / Secretion: MILK
References: UniProt: P10152, Hydrolases; Acting on ester bonds; Endoribonucleases producing 3'-phosphomonoesters

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

Software
NameVersionClassification
X-PLOR3.1model building
X-PLOR3.1refinement
X-PLOR3.1phasing
NMR software
NameVersionDeveloperClassification
X-PLOR3.1BRUNGERrefinement
DIANAstructure solution
NMR ensembleConformers submitted total number: 10

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