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Open data
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Basic information
Entry | Database: PDB / ID: 1g5g | |||||||||
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Title | FRAGMENT OF FUSION PROTEIN FROM NEWCASTLE DISEASE VIRUS | |||||||||
![]() | Fusion glycoprotein F0 | |||||||||
![]() | VIRAL PROTEIN / fusion protein / NDV / Newcastle disease virus / paramyxovirus | |||||||||
Function / homology | ![]() membrane => GO:0016020 / fusion of virus membrane with host plasma membrane / viral envelope / host cell plasma membrane / virion membrane / plasma membrane Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Lawrence, M.C. / Smith, B.J. | |||||||||
![]() | ![]() Title: The structure of the fusion glycoprotein of Newcastle disease virus suggests a novel paradigm for the molecular mechanism of membrane fusion. Authors: Chen, L. / Gorman, J.J. / McKimm-Breschkin, J. / Lawrence, L.J. / Tulloch, P.A. / Smith, B.J. / Colman, P.M. / Lawrence, M.C. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 408.5 KB | Display | ![]() |
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PDB format | ![]() | 336.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 2.2 MB | Display | ![]() |
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Full document | ![]() | 2.4 MB | Display | |
Data in XML | ![]() | 92.5 KB | Display | |
Data in CIF | ![]() | 121.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 51086.871 Da / Num. of mol.: 6 Fragment: FULL-LENGTH ECTODOMAIN (RESIDUES L32-R501) FOLLOWED BY C-MYC PURIFICATION TAG Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: Newcastle disease virus strain Queensland/66, V4 ISOLATE References: UniProt: A9LSB1, UniProt: P35936*PLUS #2: Polysaccharide | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Source method: isolated from a genetically manipulated source #3: Polysaccharide | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta- ...beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | Source method: isolated from a genetically manipulated source #4: Sugar | ChemComp-NAG / |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal |
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Crystal grow |
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Crystal grow | *PLUS Method: unknown / Details: unpublished data |
-Data collection
Diffraction |
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Diffraction source |
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Detector |
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Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | |||||||||||||||||||||||||||||||||||
Radiation wavelength |
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Reflection | Resolution: 3.3→25 Å / Num. all: 76017 / Num. obs: 73130 / % possible obs: 96.2 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 6.1 % / Rmerge(I) obs: 0.22 / Net I/σ(I): 7.04 | |||||||||||||||||||||||||||||||||||
Reflection shell | Resolution: 3.3→3.42 Å / Redundancy: 2.3 % / Rmerge(I) obs: 0.812 / Num. unique all: 7502 / % possible all: 87.2 | |||||||||||||||||||||||||||||||||||
Reflection | *PLUS Num. measured all: 438164 | |||||||||||||||||||||||||||||||||||
Reflection shell | *PLUS % possible obs: 87.2 % / Rmerge(I) obs: 0.88 / Mean I/σ(I) obs: 1.2 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 3.3→8 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||
Refinement | *PLUS σ(F): 0 / Rfactor obs: 0.224 | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_deg / Dev ideal: 1.5 |