ソフトウェア | 名称 | バージョン | 分類 |
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CNS | 1 | 精密化 | DENZO | | データ削減 | SCALEPACK | | データスケーリング |
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精密化 | 構造決定の手法: 多波長異常分散 / 解像度: 2.3→19.84 Å / Rfactor Rfree error: 0.006 / Isotropic thermal model: RESTRAINED / 交差検証法: THROUGHOUT / σ(F): 0
| Rfactor | 反射数 | %反射 | Selection details |
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Rfree | 0.266 | 1976 | 8.4 % | RANDOM |
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Rwork | 0.218 | - | - | - |
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obs | 0.218 | 23569 | 99.5 % | - |
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溶媒の処理 | 溶媒モデル: FLAT MODEL / Bsol: 39.77 Å2 / ksol: 0.32 e/Å3 |
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原子変位パラメータ | Biso mean: 46.6 Å2
| Baniso -1 | Baniso -2 | Baniso -3 |
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1- | -4.69 Å2 | 0 Å2 | 0 Å2 |
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2- | - | -1.51 Å2 | 0 Å2 |
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3- | - | - | 6.2 Å2 |
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Refine analyze | | Free | Obs |
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Luzzati coordinate error | 0.33 Å | 0.26 Å |
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Luzzati d res low | - | 5 Å |
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Luzzati sigma a | 0.22 Å | 0.14 Å |
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精密化ステップ | サイクル: LAST / 解像度: 2.3→19.84 Å
| タンパク質 | 核酸 | リガンド | 溶媒 | 全体 |
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原子数 | 2754 | 0 | 0 | 333 | 3087 |
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拘束条件 | Refine-ID | タイプ | Dev ideal | Dev ideal target |
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X-RAY DIFFRACTION | c_bond_d0.008 | | X-RAY DIFFRACTION | c_bond_d_na | | X-RAY DIFFRACTION | c_bond_d_prot | | X-RAY DIFFRACTION | c_angle_d | | X-RAY DIFFRACTION | c_angle_d_na | | X-RAY DIFFRACTION | c_angle_d_prot | | X-RAY DIFFRACTION | c_angle_deg1.2 | | X-RAY DIFFRACTION | c_angle_deg_na | | X-RAY DIFFRACTION | c_angle_deg_prot | | X-RAY DIFFRACTION | c_dihedral_angle_d18.6 | | X-RAY DIFFRACTION | c_dihedral_angle_d_na | | X-RAY DIFFRACTION | c_dihedral_angle_d_prot | | X-RAY DIFFRACTION | c_improper_angle_d0.77 | | X-RAY DIFFRACTION | c_improper_angle_d_na | | X-RAY DIFFRACTION | c_improper_angle_d_prot | | X-RAY DIFFRACTION | c_mcbond_it1.48 | 1.5 | X-RAY DIFFRACTION | c_mcangle_it2.24 | 2 | X-RAY DIFFRACTION | c_scbond_it3.42 | 2 | X-RAY DIFFRACTION | c_scangle_it4.92 | 2.5 | | | | | | | | | | | | | | | | | | | |
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LS精密化 シェル | 解像度: 2.3→2.44 Å / Rfactor Rfree error: 0.016 / Total num. of bins used: 6
| Rfactor | 反射数 | %反射 |
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Rfree | 0.273 | 296 | 8 % |
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Rwork | 0.225 | 3399 | - |
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obs | - | - | 94.8 % |
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Xplor file | Refine-ID | Serial no | Param file | Topol file |
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X-RAY DIFFRACTION | 1 | PROTEIN_REP.PARAMPROTEIN.TOPX-RAY DIFFRACTION | 2 | WATER_REP.PARAM | | | |
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ソフトウェア | *PLUS 名称: CNS / バージョン: 1 / 分類: refinement |
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拘束条件 | *PLUS Refine-ID | タイプ | Dev ideal |
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X-RAY DIFFRACTION | c_dihedral_angle_d | X-RAY DIFFRACTION | c_dihedral_angle_deg18.6 | X-RAY DIFFRACTION | c_improper_angle_d | X-RAY DIFFRACTION | c_improper_angle_deg0.77 | | | | |
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