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- PDB-1fgp: MEMBRANE PENETRATION DOMAIN OF THE MINOR COAT PROTEIN G3P OF PHAG... -

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Basic information

Entry
Database: PDB / ID: 1fgp
TitleMEMBRANE PENETRATION DOMAIN OF THE MINOR COAT PROTEIN G3P OF PHAGE FD, NMR, 15 STRUCTURES
ComponentsFD GENE 3 PROTEIN
KeywordsVIRAL PROTEIN / PHAGE COAT PROTEIN / SH3 DOMAIN / PH DOMAIN / PDZ DOMAIN / FD PHAGE / FILAMENTOUS PAHGE / PHAGE INFECTION / PTB DOMAIN
Function / homology
Function and homology information


viral entry into host cell via pilus basal pore / viral extrusion / virion attachment to host cell pilus / adhesion receptor-mediated virion attachment to host cell / entry receptor-mediated virion attachment to host cell / host cell membrane / viral capsid / integral component of membrane
Similarity search - Function
Bacteriophage, G3P, N2-domain superfamily / Phage FD Coat Protein, Membrane penetration domain / Phage FD Coat Protein,Membrane penetration domain / Phage Coat Protein A / Attachment protein G3P, N-terminal / Attachment protein G3P, N-terminal domain superfamily / Roll / Mainly Beta
Similarity search - Domain/homology
Attachment protein G3P
Similarity search - Component
Biological speciesEnterobacteria phage fd (virus)
MethodSOLUTION NMR / simulated annealing
AuthorsHolliger, P. / Riechmann, L.
CitationJournal: Structure / Year: 1997
Title: A conserved infection pathway for filamentous bacteriophages is suggested by the structure of the membrane penetration domain of the minor coat protein g3p from phage fd.
Authors: Holliger, P. / Riechmann, L.
History
DepositionDec 10, 1996-
Revision 1.0Jun 16, 1997Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: FD GENE 3 PROTEIN


Theoretical massNumber of molelcules
Total (without water)7,7111
Polymers7,7111
Non-polymers00
Water0
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)15 / 50LOWEST TOTAL ENERGIES
Representative

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Components

#1: Protein FD GENE 3 PROTEIN


Mass: 7711.479 Da / Num. of mol.: 1 / Fragment: DOMAIN 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Enterobacteria phage fd (virus) / Genus: InovirusFf phages / Species: Enterobacteria phage M13 / Plasmid: PUC119 / Cellular location (production host): SUPERNATANT / Production host: Escherichia coli (E. coli) / References: UniProt: P03661

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR
NMR experimentType: 15N + 13C NOESY-HMQC

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Sample preparation

Sample conditionspH: 6.2 / Temperature: 303 K
Crystal grow
*PLUS
Method: other / Details: NMR

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NMR measurement

NMR spectrometerType: Bruker AMX500 / Manufacturer: Bruker / Model: AMX500 / Field strength: 500 MHz

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Processing

Software
NameClassification
X-PLORmodel building
X-PLORrefinement
X-PLORphasing
NMR software
NameDeveloperClassification
X-PLORBRUNGERrefinement
X-PLORstructure solution
RefinementMethod: simulated annealing / Software ordinal: 1 / Details: SEE JRNL REFERENCE.
NMR ensembleConformer selection criteria: LOWEST TOTAL ENERGIES / Conformers calculated total number: 50 / Conformers submitted total number: 15

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