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Yorodumi- PDB-1fgp: MEMBRANE PENETRATION DOMAIN OF THE MINOR COAT PROTEIN G3P OF PHAG... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1fgp | ||||||
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Title | MEMBRANE PENETRATION DOMAIN OF THE MINOR COAT PROTEIN G3P OF PHAGE FD, NMR, 15 STRUCTURES | ||||||
Components | FD GENE 3 PROTEIN | ||||||
Keywords | VIRAL PROTEIN / PHAGE COAT PROTEIN / SH3 DOMAIN / PH DOMAIN / PDZ DOMAIN / FD PHAGE / FILAMENTOUS PAHGE / PHAGE INFECTION / PTB DOMAIN | ||||||
Function / homology | Function and homology information : / viral extrusion / virion attachment to host cell pilus / adhesion receptor-mediated virion attachment to host cell / host cell membrane / viral capsid / entry receptor-mediated virion attachment to host cell / membrane Similarity search - Function | ||||||
Biological species | Enterobacteria phage fd (virus) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Holliger, P. / Riechmann, L. | ||||||
Citation | Journal: Structure / Year: 1997 Title: A conserved infection pathway for filamentous bacteriophages is suggested by the structure of the membrane penetration domain of the minor coat protein g3p from phage fd. Authors: Holliger, P. / Riechmann, L. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1fgp.cif.gz | 304.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1fgp.ent.gz | 262.1 KB | Display | PDB format |
PDBx/mmJSON format | 1fgp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fg/1fgp ftp://data.pdbj.org/pub/pdb/validation_reports/fg/1fgp | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 7711.479 Da / Num. of mol.: 1 / Fragment: DOMAIN 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Enterobacteria phage fd (virus) / Genus: InovirusFf phages / Species: Enterobacteria phage M13 / Plasmid: PUC119 / Cellular location (production host): SUPERNATANT / Production host: Escherichia coli (E. coli) / References: UniProt: P03661 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR experiment | Type: 15N + 13C NOESY-HMQC |
-Sample preparation
Sample conditions | pH: 6.2 / Temperature: 303 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker AMX500 / Manufacturer: Bruker / Model: AMX500 / Field strength: 500 MHz |
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-Processing
Software |
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NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 / Details: SEE JRNL REFERENCE. | |||||||||
NMR ensemble | Conformer selection criteria: LOWEST TOTAL ENERGIES / Conformers calculated total number: 50 / Conformers submitted total number: 15 |