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- PDB-1fer: STRUCTURE AT PH 6.5 OF FERREDOXIN I FROM AZOTOBACTER VINELANDII A... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1fer | ||||||
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Title | STRUCTURE AT PH 6.5 OF FERREDOXIN I FROM AZOTOBACTER VINELANDII AT 2.3 ANGSTROMS RESOLUTION | ||||||
![]() | FERREDOXIN I | ||||||
![]() | ELECTRON TRANSFER(IRON-SULFUR PROTEIN) | ||||||
Function / homology | ![]() 3 iron, 4 sulfur cluster binding / 4 iron, 4 sulfur cluster binding / electron transfer activity / DNA binding / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Merritt, E.A. / Stout, G.H. / Turley, S. / Sieker, L.C. / Jensen, L.H. / Orme-Johnson, W.H. | ||||||
![]() | ![]() Title: Structure at pH 6.5 of ferredoxin I from Azotobacter vinelandii at 2.3 A resolution. Authors: Merritt, E.A. / Stout, G.H. / Turley, S. / Sieker, L.C. / Jehsen, L.H. / Orme-Johnson, W.H. #1: ![]() Title: Structure of Ferredoxin I from Azotobacter Vinelandii Authors: Stout, G.H. / Turley, S. / Sieker, L.C. / Jensen, L.H. | ||||||
History |
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Remark 650 | HELIX HELIX ASSIGNMENTS WERE BASED ON ANALYSIS USING PROGRAM *DSSP* OF W. KABSCH AND C. SANDER. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 35.7 KB | Display | ![]() |
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PDB format | ![]() | 24.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 393.4 KB | Display | ![]() |
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Full document | ![]() | 395.2 KB | Display | |
Data in XML | ![]() | 3.7 KB | Display | |
Data in CIF | ![]() | 5.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 12059.530 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() |
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#2: Chemical | ChemComp-F3S / |
#3: Chemical | ChemComp-SF4 / |
#4: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.06 Å3/Da / Density % sol: 59.77 % | ||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 277 K / pH: 6.5 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.3 Å / Lowest resolution: 30 Å / Num. obs: 7099 / Rmerge(I) obs: 3 |
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Processing
Software |
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Refinement | Rfactor Rwork: 0.17 / Highest resolution: 2.3 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.3 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 2.3 Å / Lowest resolution: 10 Å / Num. reflection obs: 6986 / Rfactor obs: 0.17 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS Biso mean: 22.5 Å2 | ||||||||||||
Refine LS restraints | *PLUS
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