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- PDB-1f94: THE 0.97 RESOLUTION STRUCTURE OF BUCANDIN, A NOVEL TOXIN ISOLATED... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1f94 | ||||||
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Title | THE 0.97 RESOLUTION STRUCTURE OF BUCANDIN, A NOVEL TOXIN ISOLATED FROM THE MALAYAN KRAIT | ||||||
![]() | BUCANDIN | ||||||
![]() | TOXIN / three-finger snake presynaptic neurotoxin | ||||||
Function / homology | CD59 / CD59 / Snake toxin-like superfamily / Ribbon / toxin activity / extracellular region / Mainly Beta / Bucandin![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Kuhn, P. / Deacon, A.M. / Comoso, S. / Rajaseger, G. / Kini, R.M. / Uson, I. / Kolatkar, P.R. | ||||||
![]() | ![]() Title: The atomic resolution structure of bucandin, a novel toxin isolated from the Malayan krait, determined by direct methods. Authors: Kuhn, P. / Deacon, A.M. / Comoso, S. / Rajaseger, G. / Kini, R.M. / Uson, I. / Kolatkar, P.R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 48.1 KB | Display | ![]() |
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PDB format | ![]() | 38.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 397.2 KB | Display | ![]() |
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Full document | ![]() | 397.5 KB | Display | |
Data in XML | ![]() | 6.2 KB | Display | |
Data in CIF | ![]() | 8.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 7293.412 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.91 Å3/Da / Density % sol: 35.47 % | |||||||||||||||||||||||||
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 8.5 Details: iso-propanol, ammonium acetate, Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K | |||||||||||||||||||||||||
Crystal grow | *PLUS | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Mar 12, 1999 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.98 Å / Relative weight: 1 |
Reflection | Resolution: 0.97→32 Å / Num. all: 33370 / Num. obs: 33370 / % possible obs: 99.5 % / Redundancy: 3.5 % / Biso Wilson estimate: 13.6 Å2 / Rmerge(I) obs: 0.054 / Net I/σ(I): 10.9 |
Reflection shell | Resolution: 0.97→0.99 Å / Redundancy: 3 % / Rmerge(I) obs: 0.66 / Num. unique all: 2329 / % possible all: 94.7 |
Reflection | *PLUS Num. measured all: 119818 |
Reflection shell | *PLUS % possible obs: 94.6 % / Rmerge(I) obs: 0.664 / Mean I/σ(I) obs: 1.1 |
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Processing
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Refinement | Resolution: 0.97→10 Å / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 0.97→10 Å
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Refine LS restraints |
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Software | *PLUS Name: SHELXL-97 / Classification: refinement | |||||||||||||||||||||||||
Refinement | *PLUS σ(F): 0 / % reflection Rfree: 5 % | |||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: s_angle_d / Dev ideal: 2.26 |