+Open data
-Basic information
Entry | Database: PDB / ID: 1ffj | ||||||
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Title | NMR STRUCTURE OF CARDIOTOXIN IN DPC-MICELLE | ||||||
Components | CYTOTOXIN 2 | ||||||
Keywords | TOXIN / all-beta sheet protein / membrane perturbation | ||||||
Function / homology | Function and homology information other organism cell membrane / toxin activity / killing of cells of another organism / extracellular region / membrane Similarity search - Function | ||||||
Biological species | Naja oxiana (Central Asian cobra) | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Authors | Dubovskii, P.V. / Dementieva, D.V. / Bocharov, E.V. / Utkin, Y.N. / Arseniev, A.S. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 2001 Title: Membrane binding motif of the P-type cardiotoxin. Authors: Dubovskii, P.V. / Dementieva, D.V. / Bocharov, E.V. / Utkin, Y.N. / Arseniev, A.S. #1: Journal: Eur.J.Biochem. / Year: 1999 Title: Two forms of Cytotoxin II (cardiotoxin) from Naja naja oxiana in Aqueous Solution. Spatial Structures with Tightly Bound Water Molecules Authors: Dementieva, D.V. / Bocharov, E.V. / Arseniev, A.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ffj.cif.gz | 349.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ffj.ent.gz | 303.6 KB | Display | PDB format |
PDBx/mmJSON format | 1ffj.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1ffj_validation.pdf.gz | 338.5 KB | Display | wwPDB validaton report |
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Full document | 1ffj_full_validation.pdf.gz | 456.8 KB | Display | |
Data in XML | 1ffj_validation.xml.gz | 20.2 KB | Display | |
Data in CIF | 1ffj_validation.cif.gz | 32.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ff/1ffj ftp://data.pdbj.org/pub/pdb/validation_reports/ff/1ffj | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 6648.238 Da / Num. of mol.: 1 / Fragment: 1 / Source method: isolated from a natural source / Source: (natural) Naja oxiana (Central Asian cobra) / Secretion: VENOM / References: UniProt: P01441 |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined using standard 2D homonuclear techniques. Sites of tightly bound water molecules were determined as in Dementieva et al., Eur.J.Biochem.1999,263,152-162. |
-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Varian UNITY / Manufacturer: Varian / Model: UNITY / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 Details: structures are based on a total of 368 NOE-derived constraints, 154 dihedral angle restraints, 248 distance restraints from hydrogen bonds and disulfides | ||||||||||||||||||||
NMR representative | Selection criteria: fewest violations | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 220 / Conformers submitted total number: 20 |