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- PDB-1eb7: Crystal structure of the di-haem cytochrome c peroxidase from Pse... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1eb7 | ||||||
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Title | Crystal structure of the di-haem cytochrome c peroxidase from Pseudomonas aeruginosa | ||||||
![]() | CYTOCHROME C551 PEROXIDASE | ||||||
![]() | OXIDOREDUCTASE / PEROXIDASE / HEME / ELECTRON TRANSPORT | ||||||
Function / homology | ![]() cytochrome-c peroxidase / cytochrome-c peroxidase activity / periplasmic space / electron transfer activity / heme binding / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Fulop, V. | ||||||
![]() | ![]() Title: Crystal Structure of the Di-Haemcytochrome C Peroxidase from Pseudomonas Aeruginosa Authors: Fulop, V. / Ridout, C.J. / Greenwood, C. / Hajdu, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 72.1 KB | Display | ![]() |
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PDB format | ![]() | 58.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 529.7 KB | Display | ![]() |
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Full document | ![]() | 533.6 KB | Display | |
Data in XML | ![]() | 8.3 KB | Display | |
Data in CIF | ![]() | 12.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 35075.438 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() | ||||
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#2: Chemical | #3: Chemical | ChemComp-CA / | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.84 Å3/Da / Density % sol: 64 % |
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Crystal grow | pH: 7.5 Details: SEE REFERENCE FULOP ET AL. J.MOL.BIOL. 232, 1208-1210 (1993), pH 7.50 |
Crystal grow | *PLUS Method: other / Details: Fulop, V., (1993) J. Mol. Biol., 232, 1208. |
-Data collection
Diffraction | Mean temperature: 293 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Feb 15, 1993 / Details: MIRRORS |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.4→25 Å / Num. obs: 20541 / % possible obs: 96 % / Observed criterion σ(I): -3 / Redundancy: 3.9 % / Biso Wilson estimate: 40.6 Å2 / Rmerge(I) obs: 0.079 / Net I/σ(I): 18.5 |
Reflection | *PLUS % possible obs: 96 % / Num. measured all: 80795 |
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Processing
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Refinement | Method to determine structure: ![]() Details: RESIDUES 223-228 WERE DISORDERED AND NOT INCLUDED IN THE MODEL
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Displacement parameters | Biso mean: 49.7 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati sigma a obs: 0.39 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.4→25 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor Rfree: 0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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