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Open data
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Basic information
Entry | Database: PDB / ID: 1du5 | ||||||
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Title | THE CRYSTAL STRUCTURE OF ZEAMATIN. | ||||||
![]() | ZEAMATIN | ||||||
![]() | ANTIFUNGAL PROTEIN / beta sandwich | ||||||
Function / homology | ![]() : / : / defense response to fungus / defense response / killing of cells of another organism / proteolysis / extracellular region Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Batalia, M.A. / Monzingo, A.F. / Ernst, S. / Roberts, W. / Robertus, J.D. | ||||||
![]() | ![]() Title: The crystal structure of the antifungal protein zeamatin, a member of the thaumatin-like, PR-5 protein family. Authors: Batalia, M.A. / Monzingo, A.F. / Ernst, S. / Roberts, W. / Robertus, J.D. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 82.5 KB | Display | ![]() |
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PDB format | ![]() | 66.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 422.8 KB | Display | ![]() |
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Full document | ![]() | 429.1 KB | Display | |
Data in XML | ![]() | 16.7 KB | Display | |
Data in CIF | ![]() | 22.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 22078.777 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.06 Å3/Da / Density % sol: 40.17 % | |||||||||||||||
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: PEG 8000, potassium phosphate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K | |||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 298 K |
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Diffraction source | Source: ![]() |
Detector | Type: SDMS / Detector: AREA DETECTOR / Date: May 4, 1993 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.5→20 Å / Num. all: 12577 / Num. obs: 12219 / % possible obs: 97.2 % / Observed criterion σ(I): 0 / Redundancy: 6.4 % / Biso Wilson estimate: 20.2 Å2 / Rmerge(I) obs: 0.085 / Net I/σ(I): 19.8 |
Reflection shell | Resolution: 2.5→2.69 Å / Redundancy: 4.5 % / Rmerge(I) obs: 0.152 / Num. unique all: 2306 / % possible all: 93.2 |
Reflection shell | *PLUS % possible obs: 93.2 % |
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Processing
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Refinement | Resolution: 2.5→5 Å / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 2.5→5 Å
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Software | *PLUS Name: ![]() | |||||||||||||||||||||||||
Refinement | *PLUS | |||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||||||
Refine LS restraints | *PLUS
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