+Open data
-Basic information
Entry | Database: PDB / ID: 4ll6 | ||||||
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Title | Structure of Myo4p globular tail domain. | ||||||
Components | Myosin-4 | ||||||
Keywords | MOTOR PROTEIN / Myo4p / globular tail domain / mRNA localization | ||||||
Function / homology | Function and homology information RHOT2 GTPase cycle / RHOT1 GTPase cycle / mating type switching / endoplasmic reticulum inheritance / cellular bud / myosin V complex / intracellular mRNA localization / cellular bud tip / vesicle transport along actin filament / microfilament motor activity ...RHOT2 GTPase cycle / RHOT1 GTPase cycle / mating type switching / endoplasmic reticulum inheritance / cellular bud / myosin V complex / intracellular mRNA localization / cellular bud tip / vesicle transport along actin filament / microfilament motor activity / filamentous actin / mRNA transport / actin filament organization / actin filament binding / actin cytoskeleton / vesicle / calmodulin binding / mitochondrion / ATP binding / cytoplasm Similarity search - Function | ||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 2.3 Å | ||||||
Authors | Shi, H. / Singh, N. / Esselborn, F. / Blobel, G. | ||||||
Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 2014 Title: Structure of a myosinbulletadaptor complex and pairing by cargo. Authors: Shi, H. / Singh, N. / Esselborn, F. / Blobel, G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4ll6.cif.gz | 83.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4ll6.ent.gz | 63.4 KB | Display | PDB format |
PDBx/mmJSON format | 4ll6.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ll/4ll6 ftp://data.pdbj.org/pub/pdb/validation_reports/ll/4ll6 | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 42707.336 Da / Num. of mol.: 1 / Fragment: UNP residues 1098-1471 / Mutation: K1366N Source method: isolated from a genetically manipulated source Source: (gene. exp.) Saccharomyces cerevisiae (brewer's yeast) Strain: ATCC 204508 / S288c / Gene: MYO4, SHE1, YAL029C, FUN22 / Production host: Escherichia coli (E. coli) / References: UniProt: P32492 | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.22 Å3/Da / Density % sol: 44.49 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop / pH: 7 Details: 10% Tacsimate, 0.1M MES, pH 7.0, 25% (w/v) PEG 1K, 10mM DTT, VAPOR DIFFUSION, SITTING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 100 K | ||||||||||||
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Diffraction source | Source: SYNCHROTRON / Site: NSLS / Beamline: X12C / Wavelength: 0.9798, 0.9801, 0.9574 | ||||||||||||
Detector | Type: ADSC QUANTUM 210 / Detector: CCD / Date: Jun 14, 2007 | ||||||||||||
Radiation | Monochromator: Si (111) / Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 2.3→35 Å / Num. all: 17416 / Num. obs: 17120 / % possible obs: 98.3 % / Observed criterion σ(F): 0 / Observed criterion σ(I): -3 |
-Processing
Software |
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Refinement | Method to determine structure: MAD / Resolution: 2.3→35 Å / σ(F): 1 / Stereochemistry target values: Maximum Likelihood
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Refinement step | Cycle: LAST / Resolution: 2.3→35 Å
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Refine LS restraints |
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