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- PDB-1drk: PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE-BINDING PROTEIN ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1drk | ||||||
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Title | PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE-BINDING PROTEIN IN BACTERIAL TRANSPORT AND CHEMOTAXIS | ||||||
![]() | D-RIBOSE-BINDING PROTEIN | ||||||
![]() | BINDING PROTEIN | ||||||
Function / homology | ![]() D-ribose transmembrane transport / monosaccharide binding / positive chemotaxis / ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing / outer membrane-bounded periplasmic space / membrane Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Mowbray, S.L. / Bjorkman, A.J. | ||||||
![]() | ![]() Title: Probing protein-protein interactions. The ribose-binding protein in bacterial transport and chemotaxis. Authors: Bjorkman, A.J. / Binnie, R.A. / Zhang, H. / Cole, L.B. / Hermodson, M.A. / Mowbray, S.L. #1: ![]() Title: The 1.7 Angstroms X-Ray Structure of the Periplasmic Ribose Receptor from Escherichia Coli Authors: Mowbray, S.L. / Cole, L.B. #2: ![]() Title: Functional Mapping of the Surface of Escherichia Coli Ribose-Binding Protein: Mutations which Affect Chemotaxis and Transport Authors: Binnie, R.A. / Zhang, H. / Mowbray, S. / Hermodson, M.A. #3: ![]() Title: Preliminary X-Ray Data for the Periplasmic Ribose Receptor from Escherichia Coli Authors: Mahendroo, M. / Cole, L.B. / Mowbray, S.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 81 KB | Display | ![]() |
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PDB format | ![]() | 62.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 429.6 KB | Display | ![]() |
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Full document | ![]() | 430.7 KB | Display | |
Data in XML | ![]() | 13.6 KB | Display | |
Data in CIF | ![]() | 19.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 28509.396 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
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#2: Sugar | ChemComp-RIP / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.31 Å3/Da / Density % sol: 46.76 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 7 / Method: vapor diffusion, hanging drop | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2 Å / Lowest resolution: 7.5 Å / Num. obs: 17203 / % possible obs: 95 % / Observed criterion σ(I): 1 / Num. measured all: 72070 / Rmerge(I) obs: 0.061 |
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Processing
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Refinement | Resolution: 2→7.5 Å / σ(F): 1 /
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Refinement step | Cycle: LAST / Resolution: 2→7.5 Å
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Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 26.1 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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