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- PDB-1drj: PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE-BINDING PROTEIN ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1drj | ||||||
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Title | PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE-BINDING PROTEIN IN BACTERIAL TRANSPORT AND CHEMOTAXIS | ||||||
![]() | D-RIBOSE-BINDING PROTEIN | ||||||
![]() | SUGAR TRANSPORT | ||||||
Function / homology | ![]() D-ribose transmembrane transport / monosaccharide binding / positive chemotaxis / ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing / outer membrane-bounded periplasmic space / membrane Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Mowbray, S.L. / Bjorkman, A.J. / Cole, L.B. | ||||||
![]() | ![]() Title: Probing protein-protein interactions. The ribose-binding protein in bacterial transport and chemotaxis. Authors: Bjorkman, A.J. / Binnie, R.A. / Zhang, H. / Cole, L.B. / Hermodson, M.A. / Mowbray, S.L. #1: ![]() Title: The 1.7 Angstroms X-Ray Structure of the Periplasmic Ribose Receptor from Escherichia Coli Authors: Mowbray, S.L. / Cole, L.B. #2: ![]() Title: Functional Mapping of the Surface of Escherichia Coli Ribose-Binding Protein: Mutations which Affect Chemotaxis and Transport Authors: Binnie, R.A. / Zhang, H. / Mowbray, S. / Hermodson, M.A. #3: ![]() Title: Preliminary X-Ray Data for the Periplasmic Ribose Receptor from Escherichia Coli Authors: Mahendroo, M. / Cole, L.B. / Mowbray, S.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 78.8 KB | Display | ![]() |
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PDB format | ![]() | 60.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 429.6 KB | Display | ![]() |
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Full document | ![]() | 431.1 KB | Display | |
Data in XML | ![]() | 13.3 KB | Display | |
Data in CIF | ![]() | 18.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 28607.564 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
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#2: Sugar | ChemComp-RIP / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.32 Å3/Da / Density % sol: 46.88 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 7 / Method: vapor diffusion, hanging drop | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 2.5 Å / Lowest resolution: 7.5 Å / Num. obs: 8119 / % possible obs: 87 % / Observed criterion σ(I): 1 / Num. measured all: 41022 / Rmerge(I) obs: 0.037 |
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Processing
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Refinement | Resolution: 2.5→7.5 Å / σ(F): 1 /
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Refinement step | Cycle: LAST / Resolution: 2.5→7.5 Å
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Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 24 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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