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Yorodumi- PDB-1dpc: CRYSTALLOGRAPHIC AND ENZYMATIC INVESTIGATIONS ON THE ROLE OF SER5... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1dpc | ||||||
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Title | CRYSTALLOGRAPHIC AND ENZYMATIC INVESTIGATIONS ON THE ROLE OF SER558, HIS610 AND ASN614 IN THE CATALYTIC MECHANISM OF AZOTOBACTER VINELANDII DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) | ||||||
Components | DIHYDROLIPOYL-TRANSACETYLASE | ||||||
Keywords | DIHYDROLIPOAMIDE ACETYLTRANSFERASE | ||||||
Function / homology | Function and homology information dihydrolipoyllysine-residue acetyltransferase / dihydrolipoyllysine-residue acetyltransferase activity / pyruvate dehydrogenase complex / glycolytic process Similarity search - Function | ||||||
Biological species | Azotobacter vinelandii (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.6 Å | ||||||
Authors | Hendle, J. / Hol, W.G.J. | ||||||
Citation | Journal: Biochemistry / Year: 1995 Title: Crystallographic and enzymatic investigations on the role of Ser558, His610, and Asn614 in the catalytic mechanism of Azotobacter vinelandii dihydrolipoamide acetyltransferase (E2p). Authors: Hendle, J. / Mattevi, A. / Westphal, A.H. / Spee, J. / de Kok, A. / Teplyakov, A. / Hol, W.G. #1: Journal: J.Mol.Biol. / Year: 1993 Title: Refined Crystal Structure of the Catalytic Domain of Dihydrolipoyl Transacetylase (E2P) from Azotobacter Vinelandii at 2.6 Angstroms Resolution Authors: Mattevi, A. / Obmolova, G. / Kalk, K.H. / Westphal, A.H. / De Kok, A. / Hol, W.G. #2: Journal: Biochemistry / Year: 1993 Title: Crystallographic Analysis of Substrate Binding and Catalysis in Dihydrolipoyl Transacetylase (E2P) Authors: Mattevi, A. / Obmolova, G. / Kalk, K.H. / Teplyakov, A. / Hol, W.G. #3: Journal: Science / Year: 1992 Title: Atomic Structure of the Cubic Core of the Pyruvate Dehydrogenase Multienzyme Complex Authors: Mattevi, A. / Obmolova, G. / Schulze, E. / Kalk, K.H. / Westphal, A.H. / De Kok, A. / Hol, W.G.J. | ||||||
History |
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Remark 700 | SHEET SHEET A IS ACTUALLY A FOUR-STRANDED SHEET. IT CONTAINS TWO ADDITIONAL STRANDS A 3 ILE 409 PRO ...SHEET SHEET A IS ACTUALLY A FOUR-STRANDED SHEET. IT CONTAINS TWO ADDITIONAL STRANDS A 3 ILE 409 PRO 413 -1 A 4 THR 566 PHE 568 -1 FROM A THREE-FOLD RELATED SUBUNIT. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1dpc.cif.gz | 58.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1dpc.ent.gz | 44.2 KB | Display | PDB format |
PDBx/mmJSON format | 1dpc.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dp/1dpc ftp://data.pdbj.org/pub/pdb/validation_reports/dp/1dpc | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO 575 |
-Components
#1: Protein | Mass: 26242.668 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Azotobacter vinelandii (bacteria) References: UniProt: P10802, dihydrolipoyllysine-residue acetyltransferase |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 4.51 Å3/Da / Density % sol: 72.73 % | |||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 7 / Method: vapor diffusion, hanging drop | |||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.5418 |
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Detector | Type: SIEMENS-NICOLET X100 / Detector: AREA DETECTOR / Date: Nov 17, 1992 |
Radiation | Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Redundancy: 3.95 % |
Reflection | *PLUS Highest resolution: 2.6 Å / Num. obs: 13594 / % possible obs: 93.3 % / Num. measured all: 36952 / Rmerge(I) obs: 0.072 |
-Processing
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Refinement | Resolution: 2.6→10 Å / σ(F): 1 /
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Refinement step | Cycle: LAST / Resolution: 2.6→10 Å
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Refine LS restraints |
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