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Yorodumi- PDB-1dk9: SOLUTION STRUCTURE ANALYSIS OF THE DNA DUPLEX D(CATGAGTAC)D(GTACTCATG) -
+Open data
-Basic information
Entry | Database: PDB / ID: 1dk9 | ||||||
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Title | SOLUTION STRUCTURE ANALYSIS OF THE DNA DUPLEX D(CATGAGTAC)D(GTACTCATG) | ||||||
Components |
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Keywords | DNA / DUPLEX | ||||||
Function / homology | DNA Function and homology information | ||||||
Method | SOLUTION NMR | ||||||
Authors | Klewer, D.A. / Hoskins, A. / Davisson, V.J. / Bergstrom, D.E. / LiWang, A.C. | ||||||
Citation | Journal: Nucleic Acids Res. / Year: 2000 Title: NMR structure of a DNA duplex containing nucleoside analog 1-(2'-deoxy-beta-D-ribofuranosyl)-3-nitropyrrole and the structure of the unmodified control. Authors: Klewer, D.A. / Hoskins, A. / Zhang, P. / Davisson, V.J. / Bergstrom, D.E. / LiWang, A.C. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1dk9.cif.gz | 20.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1dk9.ent.gz | 13.4 KB | Display | PDB format |
PDBx/mmJSON format | 1dk9.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1dk9_validation.pdf.gz | 235.9 KB | Display | wwPDB validaton report |
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Full document | 1dk9_full_validation.pdf.gz | 235.6 KB | Display | |
Data in XML | 1dk9_validation.xml.gz | 1.9 KB | Display | |
Data in CIF | 1dk9_validation.cif.gz | 2.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dk/1dk9 ftp://data.pdbj.org/pub/pdb/validation_reports/dk/1dk9 | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 2739.824 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: THIS SEQUENCE WAS CHEMICALLY SYNTHESIZED |
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#2: DNA chain | Mass: 2730.810 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: THIS SEQUENCE WAS CHEMICALLY SYNTHESIZED |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 4.5mM duplex, 100mM NaCl, 10mM NaOP, 1mM EDTA / Solvent system: 95% H2O/5% D2O |
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Sample conditions | pH: 7 / Pressure: ambient / Temperature: 278 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
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-Processing
NMR software |
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NMR ensemble | Conformers submitted total number: 1 |