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Open data
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Basic information
Entry | Database: PDB / ID: 1d9q | ||||||
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Title | OXIDIZED PEA FRUCTOSE-1,6-BISPHOSPHATASE FORM 1 | ||||||
![]() | FRUCTOSE-1,6-BISPHOSPHATASE | ||||||
![]() | HYDROLASE / CHLOROPLAST / PHOTOSYNTHESIS / REDOX REGULATION / THIOREDOXIN / ALLOSTERY / DISULFIDE BRIDGE / CALVIN CYCLE | ||||||
Function / homology | ![]() sucrose biosynthetic process / reductive pentose-phosphate cycle / fructose-bisphosphatase / fructose 1,6-bisphosphate 1-phosphatase activity / fructose 6-phosphate metabolic process / fructose metabolic process / fructose 1,6-bisphosphate metabolic process / chloroplast stroma / gluconeogenesis / metal ion binding / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Chiadmi, M. / Navaza, A. / Miginiac-Maslow, M. / Jacquot, J.-P. / Cherfils, J. | ||||||
![]() | ![]() Title: Redox signalling in the chloroplast: structure of oxidized pea fructose-1,6-bisphosphate phosphatase. Authors: Chiadmi, M. / Navaza, A. / Miginiac-Maslow, M. / Jacquot, J.P. / Cherfils, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 256.7 KB | Display | ![]() |
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PDB format | ![]() | 206 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 442.4 KB | Display | ![]() |
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Full document | ![]() | 451.1 KB | Display | |
Data in XML | ![]() | 47.1 KB | Display | |
Data in CIF | ![]() | 66.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1dbzC ![]() 1dcuC ![]() 1spiS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 39242.027 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.47 Å3/Da / Density % sol: 50.29 % | ||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 290 K / Method: vapor diffusion, hanging drop / pH: 5 Details: 25% PEG 400, 50MM NA ACETATE (PH 5.5), 50MM MGCL2, 5MM F6P, VAPOR DIFFUSION, HANGING DROP, temperature 290K | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 277 K |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.965 Å / Relative weight: 1 |
Reflection | Resolution: 2.4→10 Å / Num. all: 53059 / Num. obs: 52402 / % possible obs: 89 % / Observed criterion σ(F): 2 / Redundancy: 2.7 % / Biso Wilson estimate: 39.5 Å2 / Rmerge(I) obs: 0.045 / Net I/σ(I): 15.7 |
Reflection shell | Resolution: 2.4→2.42 Å / Num. unique all: 1228 / % possible all: 84 |
Reflection | *PLUS Num. measured all: 242800 |
Reflection shell | *PLUS % possible obs: 84 % |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1SPI Resolution: 2.4→10 Å / σ(F): 2
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Refinement step | Cycle: LAST / Resolution: 2.4→10 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | |||||||||||||||
Refine LS restraints | *PLUS
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