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- PDB-1cb1: THREE-DIMENSIONAL SOLUTION STRUCTURE OF CA2+-LOADED PORCINE CALBI... -

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Basic information

Entry
Database: PDB / ID: 1cb1
TitleTHREE-DIMENSIONAL SOLUTION STRUCTURE OF CA2+-LOADED PORCINE CALBINDIN D9K DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
ComponentsCALBINDIN D9K
KeywordsCALCIUM-BINDING PROTEIN
Function / homology
Function and homology information


vitamin D binding / transition metal ion binding / calcium-dependent protein binding / calcium ion binding / cytoplasm
Similarity search - Function
S-100 / S-100/ICaBP type calcium binding protein signature. / S100/Calcium binding protein 7/8-like, conserved site / S100/CaBP-9k-type, calcium binding, subdomain / S-100/ICaBP type calcium binding domain / S-100/ICaBP type calcium binding domain / EF hand domain / EF-hand / Recoverin; domain 1 / EF-hand, calcium binding motif ...S-100 / S-100/ICaBP type calcium binding protein signature. / S100/Calcium binding protein 7/8-like, conserved site / S100/CaBP-9k-type, calcium binding, subdomain / S-100/ICaBP type calcium binding domain / S-100/ICaBP type calcium binding domain / EF hand domain / EF-hand / Recoverin; domain 1 / EF-hand, calcium binding motif / EF-Hand 1, calcium-binding site / EF-hand calcium-binding domain. / EF-hand calcium-binding domain profile. / EF-hand domain / EF-hand domain pair / Orthogonal Bundle / Mainly Alpha
Similarity search - Domain/homology
Biological speciesSus scrofa (pig)
MethodSOLUTION NMR
AuthorsAkke, M. / Drakenberg, T. / Chazin, W.J.
Citation
Journal: Biochemistry / Year: 1992
Title: Three-dimensional solution structure of Ca(2+)-loaded porcine calbindin D9k determined by nuclear magnetic resonance spectroscopy.
Authors: Akke, M. / Drakenberg, T. / Chazin, W.J.
#1: Journal: Biochemistry / Year: 1989
Title: 1H NMR Studies of Porcine Calbindin D9K in Solution: Sequential Resonance Assignment, Secondary Structure, and Global Fold
Authors: Drakenberg, T. / Hofmann, T. / Chazin, W.J.
History
DepositionDec 13, 1991Processing site: BNL
Revision 1.0Oct 31, 1993Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Feb 16, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: CALBINDIN D9K


Theoretical massNumber of molelcules
Total (without water)8,8091
Polymers8,8091
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)13 / -
Representative

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Components

#1: Protein CALBINDIN D9K


Mass: 8808.881 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Sus scrofa (pig) / References: UniProt: P02632

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

NMR software
NameDeveloperClassification
DISGEOHAVEL,WUTHRICHrefinement
AMBER RESTRAINED MOLECULAR DYNAMICS ANNEALINGGIPPERT,YIP,WRIGHT,CASErefinement
NMR ensembleConformers submitted total number: 13

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