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- PDB-1c05: SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S4 DELTA 41, REFINED WITH... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1c05 | ||||||
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Title | SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S4 DELTA 41, REFINED WITH DIPOLAR COUPLINGS (MINIMIZED AVERAGE STRUCTURE) | ||||||
![]() | RIBOSOMAL PROTEIN S4 DELTA 41 | ||||||
![]() | RIBOSOME / TWO SUBDOMAINS / UNIQUE TOPOLOGY / POSSIBLE HELIX-TURN-HELIX MOTIF | ||||||
Function / homology | ![]() ribosomal small subunit biogenesis / small ribosomal subunit / rRNA binding / structural constituent of ribosome / translation / response to antibiotic Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | SOLUTION NMR / hybrid DGSA protocol without the dipolar coupling restraints, additional SA with the dipolar coupling restraints add | ||||||
Model type details | minimized average | ||||||
![]() | Markus, M.A. / Gerstner, R.B. / Draper, D.E. / Torchia, D.A. | ||||||
![]() | ![]() Title: Refining the overall structure and subdomain orientation of ribosomal protein S4 delta41 with dipolar couplings measured by NMR in uniaxial liquid crystalline phases. Authors: Markus, M.A. / Gerstner, R.B. / Draper, D.E. / Torchia, D.A. #1: ![]() Title: The solution structure of ribosomal protein S4 delta 41 reveals two subdomains and a positively charged surface that may interact with RNA Authors: Markus, M.A. / Gerstner, R.B. / Draper, D.E. / Torchia, D.A. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Download
PDBx/mmCIF format | ![]() | 67.9 KB | Display | ![]() |
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PDB format | ![]() | 51.9 KB | Display | ![]() |
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-Validation report
Summary document | ![]() | 335 KB | Display | ![]() |
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Full document | ![]() | 341 KB | Display | |
Data in XML | ![]() | 5.5 KB | Display | |
Data in CIF | ![]() | 6.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 18624.359 Da / Num. of mol.: 1 / Fragment: S4 DELTA 41 (S4 RESIDUES 42-200) Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Plasmid: PET13A / Production host: ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined with NOE restraints from multidimensional heteronuclear experiments, dihedral angle restraints based on measurements of scalar coupling constants, and dipolar ...Text: This structure was determined with NOE restraints from multidimensional heteronuclear experiments, dihedral angle restraints based on measurements of scalar coupling constants, and dipolar coupling restraints measured on samples in partially aligned phases. |
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Sample preparation
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: hybrid DGSA protocol without the dipolar coupling restraints, additional SA with the dipolar coupling restraints add Software ordinal: 1 Details: SUMMARY OF RESTRAINTS: 2170 NOE, 86 HYDROGEN BOND, 114 DIHEDRAL ANGLE, AND 101 DIPOLAR COUPLINGS | ||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||
NMR ensemble | Conformers submitted total number: 1 |