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Yorodumi- PDB-1bzt: STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C B... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1bzt | ||||||
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Title | STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE | ||||||
Components | TRNA | ||||||
Keywords | RNA / TRNA / PSEUDOURIDINE / ANTICODON | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Method | SOLUTION NMR / molecular dynamics | ||||||
Authors | Durant, P.C. / Davis, D.R. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1999 Title: Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine. Authors: Durant, P.C. / Davis, D.R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1bzt.cif.gz | 18.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1bzt.ent.gz | 11.8 KB | Display | PDB format |
PDBx/mmJSON format | 1bzt.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1bzt_validation.pdf.gz | 304.3 KB | Display | wwPDB validaton report |
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Full document | 1bzt_full_validation.pdf.gz | 304.3 KB | Display | |
Data in XML | 1bzt_validation.xml.gz | 2.1 KB | Display | |
Data in CIF | 1bzt_validation.cif.gz | 2.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bz/1bzt ftp://data.pdbj.org/pub/pdb/validation_reports/bz/1bzt | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 5350.189 Da / Num. of mol.: 1 / Fragment: ANTICODON (RESIDUES 27-43) / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: LOWEST RMSD DIFFERENCE FROM AVERAGE STRUCTURE. STRUCTURE WAS DETERMINED USING RESTRAINTS FROM HOMONUCLEAR ROESY, DQCOSY AND NOESY DATA. ASSIGNMENTS WERE MADE WITH A COMBINATION OF ROESY, NOESY, ...Text: LOWEST RMSD DIFFERENCE FROM AVERAGE STRUCTURE. STRUCTURE WAS DETERMINED USING RESTRAINTS FROM HOMONUCLEAR ROESY, DQCOSY AND NOESY DATA. ASSIGNMENTS WERE MADE WITH A COMBINATION OF ROESY, NOESY, TOCSY, 1H-13C HMQC AND 1H-31P. |
-Sample preparation
Details | Contents: H2O/D2O |
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Sample conditions | Ionic strength: 100 mM NACL / pH: 5 / Temperature: 303 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Varian UNITY 500 / Manufacturer: Varian / Model: UNITY 500 / Field strength: 500 MHz |
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-Processing
Software |
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NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 1 / Details: AMBER FORCEFIELD | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: LEAST RESTRAINT VIOLATION / Conformers calculated total number: 50 / Conformers submitted total number: 1 |