+Open data
-Basic information
Entry | Database: PDB / ID: 1bvd | ||||||
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Title | STRUCTURE OF A BILIVERDIN APOMYOGLOBIN COMPLEX (FORM B) AT 98 K | ||||||
Components | APOMYOGLOBIN | ||||||
Keywords | OXYGEN STORAGE | ||||||
Function / homology | Function and homology information Oxidoreductases; Acting on other nitrogenous compounds as donors / nitrite reductase activity / sarcoplasm / Oxidoreductases; Acting on a peroxide as acceptor; Peroxidases / removal of superoxide radicals / oxygen carrier activity / peroxidase activity / oxygen binding / heme binding / extracellular exosome / metal ion binding Similarity search - Function | ||||||
Biological species | Physeter catodon (sperm whale) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.4 Å | ||||||
Authors | Wagner, U.G. / Mueller, N. / Schmitzberger, W. / Falk, H. / Kratky, C. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1995 Title: Structure determination of the biliverdin apomyoglobin complex: crystal structure analysis of two crystal forms at 1.4 and 1.5 A resolution. Authors: Wagner, U.G. / Muller, N. / Schmitzberger, W. / Falk, H. / Kratky, C. #1: Journal: Eur.J.Biochem. / Year: 1990 Title: Nuclear-Magnetic-Resonance Investigations of the Biliverdin Apomyoglobin Complex Authors: Marko, H. / Mueller, N. / Falk, H. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1bvd.cif.gz | 50 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1bvd.ent.gz | 35.3 KB | Display | PDB format |
PDBx/mmJSON format | 1bvd.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1bvd_validation.pdf.gz | 461.5 KB | Display | wwPDB validaton report |
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Full document | 1bvd_full_validation.pdf.gz | 466.9 KB | Display | |
Data in XML | 1bvd_validation.xml.gz | 6.3 KB | Display | |
Data in CIF | 1bvd_validation.cif.gz | 10.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bv/1bvd ftp://data.pdbj.org/pub/pdb/validation_reports/bv/1bvd | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 17234.951 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: CRYSTAL FORM B / Source: (natural) Physeter catodon (sperm whale) / References: UniProt: P02185 |
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#2: Chemical | ChemComp-BLA / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.18 Å3/Da / Density % sol: 43.59 % | ||||||||||||||||||||
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Crystal grow | *PLUS pH: 6.8 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.54 |
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Detector | Type: SIEMENS-NICOLET X100 / Detector: AREA DETECTOR / Date: Jul 6, 1993 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54 Å / Relative weight: 1 |
Reflection | Num. obs: 28520 / % possible obs: 91 % / Observed criterion σ(I): 2 / Rmerge(I) obs: 0.04 |
Reflection | *PLUS Highest resolution: 1.4 Å / Rmerge(I) obs: 0.04 |
-Processing
Software |
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Refinement | Resolution: 1.4→8 Å / σ(F): 0
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Displacement parameters | Biso mean: 5.32 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.4→8 Å
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Refine LS restraints |
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