+Open data
-Basic information
Entry | Database: PDB / ID: 1bhs | ||||||
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Title | HUMAN ESTROGENIC 17BETA-HYDROXYSTEROID DEHYDROGENASE | ||||||
Components | 17BETA-HYDROXYSTEROID DEHYDROGENASE | ||||||
Keywords | OXIDOREDUCTASE / SHORT-CHAIN DEHYDROGENASE / STEROID DEHYDROGENASE / ESTROGEN / HUMAN TYPE I 17BETA-HSD / HUMAN PLACENTAL 17BETA-HSD | ||||||
Function / homology | Function and homology information estradiol binding / 3(or 17)beta-hydroxysteroid dehydrogenase / 17-beta-hydroxysteroid dehydrogenase (NADP+) activity / estrogen biosynthetic process / testosterone dehydrogenase [NAD(P)+] activity / cellular response to metal ion / Estrogen biosynthesis / dihydrotestosterone 17-beta-dehydrogenase activity / testosterone biosynthetic process / testosterone dehydrogenase (NAD+) activity ...estradiol binding / 3(or 17)beta-hydroxysteroid dehydrogenase / 17-beta-hydroxysteroid dehydrogenase (NADP+) activity / estrogen biosynthetic process / testosterone dehydrogenase [NAD(P)+] activity / cellular response to metal ion / Estrogen biosynthesis / dihydrotestosterone 17-beta-dehydrogenase activity / testosterone biosynthetic process / testosterone dehydrogenase (NAD+) activity / testosterone 17-beta-dehydrogenase (NADP+) activity / 17beta-estradiol 17-dehydrogenase / estradiol 17-beta-dehydrogenase [NAD(P)+] activity / steroid biosynthetic process / estrogen metabolic process / NADP+ binding / lysosome organization / The canonical retinoid cycle in rods (twilight vision) / small molecule binding / catalytic activity / adipose tissue development / skeletal muscle tissue development / steroid binding / bone development / NADP binding / gene expression / protein homodimerization activity / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.2 Å | ||||||
Authors | Ghosh, D. | ||||||
Citation | Journal: Structure / Year: 1995 Title: Structure of human estrogenic 17 beta-hydroxysteroid dehydrogenase at 2.20 A resolution. Authors: Ghosh, D. / Pletnev, V.Z. / Zhu, D.W. / Wawrzak, Z. / Duax, W.L. / Pangborn, W. / Labrie, F. / Lin, S.X. #1: Journal: J.Mol.Biol. / Year: 1993 Title: Crystallization and Preliminary X-Ray Diffraction Analysis of the Complex of Human Placental 17 Beta-Hydroxysteroid Dehydrogenase with Nadp+ Authors: Zhu, D.W. / Lee, X. / Breton, R. / Ghosh, D. / Pangborn, W. / Daux, W.L. / Lin, S.X. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1bhs.cif.gz | 67 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1bhs.ent.gz | 49.3 KB | Display | PDB format |
PDBx/mmJSON format | 1bhs.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1bhs_validation.pdf.gz | 364.5 KB | Display | wwPDB validaton report |
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Full document | 1bhs_full_validation.pdf.gz | 371.4 KB | Display | |
Data in XML | 1bhs_validation.xml.gz | 7.6 KB | Display | |
Data in CIF | 1bhs_validation.cif.gz | 11.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bh/1bhs ftp://data.pdbj.org/pub/pdb/validation_reports/bh/1bhs | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 34887.828 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Homo sapiens (human) References: UniProt: P14061, 17beta-estradiol 17-dehydrogenase |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.41 Å3/Da / Density % sol: 45 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 7.5 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.5418 |
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Detector | Type: RIGAKU RAXIS IIC / Detector: IMAGE PLATE / Date: Nov 16, 1993 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 14079 / % possible obs: 81 % / Redundancy: 3.1 % / Rmerge(I) obs: 0.064 |
Reflection | *PLUS Highest resolution: 2.2 Å / Num. measured all: 43960 |
Reflection shell | *PLUS Mean I/σ(I) obs: 2.5 |
-Processing
Software |
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Refinement | Resolution: 2.2→8 Å / σ(F): 1 Details: THE REGION 192 - 200 IS VERY POORLY DEFINED IN THE ELECTRON DENSITY MAPS AND WAS MODELED STEREOCHEMICALLY.
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Displacement parameters | Biso mean: 39 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati coordinate error obs: 0.2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.2→8 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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