+データを開く
-基本情報
登録情報 | データベース: PDB / ID: 1bet | ||||||
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タイトル | NEW PROTEIN FOLD REVEALED BY A 2.3 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF NERVE GROWTH FACTOR | ||||||
要素 | BETA-NERVE GROWTH FACTOR | ||||||
キーワード | GROWTH FACTOR (成長因子) | ||||||
機能・相同性 | 機能・相同性情報 TRKA activation by NGF / NFG and proNGF binds to p75NTR / NADE modulates death signalling / NGF processing / Axonal growth stimulation / Frs2-mediated activation / negative regulation of type B pancreatic cell apoptotic process / positive regulation of neurotrophin TRK receptor signaling pathway / PI3K/AKT activation / ARMS-mediated activation ...TRKA activation by NGF / NFG and proNGF binds to p75NTR / NADE modulates death signalling / NGF processing / Axonal growth stimulation / Frs2-mediated activation / negative regulation of type B pancreatic cell apoptotic process / positive regulation of neurotrophin TRK receptor signaling pathway / PI3K/AKT activation / ARMS-mediated activation / nerve growth factor receptor binding / NRIF signals cell death from the nucleus / p75NTR recruits signalling complexes / Retrograde neurotrophin signalling / NF-kB is activated and signals survival / positive regulation of neuron maturation / metalloendopeptidase inhibitor activity / nerve growth factor signaling pathway / regulation of neurotransmitter secretion / nerve development / positive regulation of collateral sprouting / peripheral nervous system development / regulation of release of sequestered calcium ion into cytosol / axon extension / positive regulation of Ras protein signal transduction / regulation of neuron differentiation / transmembrane receptor protein tyrosine kinase activator activity / positive regulation of stem cell proliferation / positive regulation of axon extension / positive regulation of DNA binding / positive regulation of protein autophosphorylation / extrinsic apoptotic signaling pathway in absence of ligand / sensory perception of pain / positive regulation of neuron differentiation / adult locomotory behavior / neuron projection morphogenesis / positive regulation of protein ubiquitination / endosome lumen / cell surface receptor protein tyrosine kinase signaling pathway / growth factor activity / modulation of chemical synaptic transmission / 記憶 / positive regulation of neuron projection development / 概日リズム / neuron projection development / シナプス小胞 / positive regulation of peptidyl-serine phosphorylation / positive regulation of cell growth / neuron apoptotic process / negative regulation of neuron apoptotic process / positive regulation of ERK1 and ERK2 cascade / positive regulation of protein phosphorylation / 小胞体 / 神経繊維 / lipid binding / 樹状突起 / positive regulation of cell population proliferation / positive regulation of gene expression / extracellular space / extracellular region 類似検索 - 分子機能 | ||||||
生物種 | Mus musculus (ハツカネズミ) | ||||||
手法 | X線回折 / 解像度: 2.3 Å | ||||||
データ登録者 | Mcdonald, N.Q. / Lapatto, R. / Murray-Rust, J. / Gunning, J. / Wlodawer, A. / Blundell, T.L. | ||||||
引用 | ジャーナル: Nature / 年: 1991 タイトル: New protein fold revealed by a 2.3-A resolution crystal structure of nerve growth factor. 著者: McDonald, N.Q. / Lapatto, R. / Murray-Rust, J. / Gunning, J. / Wlodawer, A. / Blundell, T.L. | ||||||
履歴 |
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-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
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-ダウンロードとリンク
-ダウンロード
PDBx/mmCIF形式 | 1bet.cif.gz | 32.3 KB | 表示 | PDBx/mmCIF形式 |
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PDB形式 | pdb1bet.ent.gz | 22.2 KB | 表示 | PDB形式 |
PDBx/mmJSON形式 | 1bet.json.gz | ツリー表示 | PDBx/mmJSON形式 | |
その他 | その他のダウンロード |
-検証レポート
アーカイブディレクトリ | https://data.pdbj.org/pub/pdb/validation_reports/be/1bet ftp://data.pdbj.org/pub/pdb/validation_reports/be/1bet | HTTPS FTP |
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-関連構造データ
-リンク
-集合体
登録構造単位 |
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1 |
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単位格子 |
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-要素
#1: タンパク質 | 分子量: 11992.542 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Mus musculus (ハツカネズミ) / 参照: UniProt: P01139 |
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#2: 水 | ChemComp-HOH / |
-実験情報
-実験
実験 | 手法: X線回折 |
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-試料調製
結晶 | マシュー密度: 3.5 Å3/Da / 溶媒含有率: 64.87 % | |||||||||||||||
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結晶化 | *PLUS pH: 6.8 / 手法: その他 | |||||||||||||||
溶液の組成 | *PLUS
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-データ収集
反射 | *PLUS 最高解像度: 2.3 Å / Num. obs: 7522 / % possible obs: 90.3 % / Rmerge(I) obs: 0.066 |
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-解析
ソフトウェア |
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精密化 | 解像度: 2.3→8 Å / Rfactor Rwork: 0.22 / Rfactor obs: 0.22 詳細: THERE IS VERY POOR ELECTRON DENSITY FOR THE ASN 43 - SER 47 LOOP. THERE IS NO FITTABLE DENSITY FOR RESIDUES 1 - 9 OR FOR THE C-TERMINUS. | ||||||||||||
精密化ステップ | サイクル: LAST / 解像度: 2.3→8 Å
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精密化 | *PLUS Rfactor obs: 0.22 / Rfactor Rwork: 0.22 | ||||||||||||
溶媒の処理 | *PLUS | ||||||||||||
原子変位パラメータ | *PLUS | ||||||||||||
拘束条件 | *PLUS タイプ: x_bond_d / Dev ideal: 0.04 |