+Open data
-Basic information
Entry | Database: PDB / ID: 1azt | ||||||
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Title | GS-ALPHA COMPLEXED WITH GTP-GAMMA-S | ||||||
Components | GS-ALPHA | ||||||
Keywords | HYDROLASE / SIGNAL TRANSDUCING PROTEIN / GTP-BINDING PROTEIN | ||||||
Function / homology | Function and homology information sensory perception of chemical stimulus / mu-type opioid receptor binding / corticotropin-releasing hormone receptor 1 binding / beta-2 adrenergic receptor binding / D1 dopamine receptor binding / positive regulation of cAMP-mediated signaling / adenylate cyclase-activating adrenergic receptor signaling pathway / ionotropic glutamate receptor binding / insulin-like growth factor receptor binding / adenylate cyclase activator activity ...sensory perception of chemical stimulus / mu-type opioid receptor binding / corticotropin-releasing hormone receptor 1 binding / beta-2 adrenergic receptor binding / D1 dopamine receptor binding / positive regulation of cAMP-mediated signaling / adenylate cyclase-activating adrenergic receptor signaling pathway / ionotropic glutamate receptor binding / insulin-like growth factor receptor binding / adenylate cyclase activator activity / G-protein beta/gamma-subunit complex binding / adenylate cyclase-activating G protein-coupled receptor signaling pathway / positive regulation of GTPase activity / adenylate cyclase-activating dopamine receptor signaling pathway / heterotrimeric G-protein complex / GTPase activity / GTP binding / metal ion binding Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.3 Å | ||||||
Authors | Tesmer, J.J.G. / Sprang, S.R. | ||||||
Citation | Journal: Science / Year: 1997 Title: Crystal structure of the adenylyl cyclase activator Gsalpha Authors: Sunahara, R.K. / Tesmer, J.J. / Gilman, A.G. / Sprang, S.R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1azt.cif.gz | 151.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1azt.ent.gz | 121.9 KB | Display | PDB format |
PDBx/mmJSON format | 1azt.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/az/1azt ftp://data.pdbj.org/pub/pdb/validation_reports/az/1azt | HTTPS FTP |
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-Related structure data
Related structure data | 1giaS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.9999, -0.0113, -0.0105), Vector: |
-Components
#1: Protein | Mass: 46712.500 Da / Num. of mol.: 2 Mutation: C-TERMINAL HEXAHISTIDINE TAG, NOT PALMITOYLATED AT AMINO TERMINUS Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bos taurus (cattle) / Cellular location: CYTOPLASM AND INNER PLASMA MEMBRANE / Gene: GNAS / Organ: PLASMA / Variant: SHORT SPLICE FORM / Plasmid: PQE60-GSALPHA-H / Species (production host): Escherichia coli / Cellular location (production host): CYTOPLASM / Gene (production host): GNAS / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21 / Variant (production host): DE3 / References: UniProt: P04896 #2: Chemical | #3: Chemical | ChemComp-PO4 / #4: Chemical | #5: Water | ChemComp-HOH / | Sequence details | DATABASE ENTRY IS FOR THE LONG SPLICE VARIANT. RESIDUES 71-84 ARE SPLICED OUT IN THE SHORT SPLICE ...DATABASE ENTRY IS FOR THE LONG SPLICE VARIANT. RESIDUES 71-84 ARE SPLICED OUT IN THE SHORT SPLICE VARIANT USED IN THIS EXPERIMENT | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 2 |
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-Sample preparation
Crystal | Density Matthews: 3.1 Å3/Da / Density % sol: 60 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Method: vapor diffusion, hanging drop / pH: 4.5 Details: CRYSTALLIZED IN HANGING DROPS CONTAINING PROTEIN MIXED 1:1 WITH WELL SOLUTION CONSISTING OF 90-100% SATURATED KH2PO4 OR NAH2PO4 (UNBUFFERED)., pH 4.5, vapor diffusion - hanging drop | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 20 ℃ / pH: 8 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: CHESS / Beamline: A1 / Wavelength: 0.908 |
Detector | Type: ADSC QUANTUM / Detector: CCD / Date: Jun 1, 1997 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.908 Å / Relative weight: 1 |
Reflection | Highest resolution: 2.5 Å / Num. obs: 37636 / % possible obs: 94 % / Observed criterion σ(I): -2 / Redundancy: 4.2 % / Biso Wilson estimate: 30.6 Å2 / Rsym value: 0.138 / Net I/σ(I): 8.3 |
Reflection shell | Resolution: 2.5→2.54 Å / Redundancy: 2.7 % / Mean I/σ(I) obs: 2.5 / Rsym value: 0.417 / % possible all: 95.1 |
Reflection | *PLUS Rmerge(I) obs: 0.138 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: PDB ENTRY 1GIA Resolution: 2.3→15 Å / Rfactor Rfree error: 0.005 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / Details: BULK SOLVENT CORRECTION WAS USED.
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Displacement parameters | Biso mean: 52.2 Å2
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Refine analyze | Luzzati d res low obs: 15 Å / Luzzati sigma a obs: 0.31 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.3→15 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.3→2.4 Å / Rfactor Rfree error: 0.022 / Total num. of bins used: 8
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Xplor file |
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Software | *PLUS Name: X-PLOR / Version: 3.851 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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