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Open data
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Basic information
Entry | Database: PDB / ID: 1auv | ||||||
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Title | STRUCTURE OF THE C DOMAIN OF SYNAPSIN IA FROM BOVINE BRAIN | ||||||
![]() | SYNAPSIN IA | ||||||
![]() | TRANSFERASE / SYNAPSE / PHOSPHORYLATION / SYNAPSIN IA C-DOMAIN | ||||||
Function / homology | ![]() neurotransmitter secretion / cell projection / synaptic vesicle membrane / synaptic vesicle / actin binding / Golgi apparatus / ATP binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Esser, L. / Wang, C. / Deisenhofer, J. | ||||||
![]() | ![]() Title: Synapsin I is structurally similar to ATP-utilizing enzymes. Authors: Esser, L. / Wang, C.R. / Hosaka, M. / Smagula, C.S. / Sudhof, T.C. / Deisenhofer, J. #1: ![]() Title: Identification, Expression, and Crystallization of the Protease-Resistant Conserved Domain of Synapsin I Authors: Wang, C.R. / Esser, L. / Smagula, C.S. / Sudhof, T.C. / Deisenhofer, J. #2: ![]() Title: Synapsins: Mosaics of Shared and Individual Domains in a Family of Synaptic Vesicle Phosphoproteins Authors: Sudhof, T.C. / Czernik, A.J. / Kao, H.T. / Takei, K. / Johnston, P.A. / Horiuchi, A. / Kanazir, S.D. / Wagner, M.A. / Perin, M.S. / De Camilli, P. / Greengard, P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 126.8 KB | Display | ![]() |
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PDB format | ![]() | 105.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 378.7 KB | Display | ![]() |
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Full document | ![]() | 385.3 KB | Display | |
Data in XML | ![]() | 13 KB | Display | |
Data in CIF | ![]() | 20.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.414908, -0.346441, 0.841326), Vector: |
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Components
#1: Protein | Mass: 35417.820 Da / Num. of mol.: 2 / Fragment: RESIDUES 110 - 420 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.15 Å3/Da / Density % sol: 42.83 % Description: DATA WERE COLLECTED USING THE INVERSE BEAM METHOD | ||||||||||||||||||||||||
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Crystal grow | Temperature: 299 K / pH: 7.25 Details: PROTEIN WAS CRYSTALLIZED FROM 5 % PEG 4000, 50 MM HEPES, PH 7.25 AT 26 DEG. CELSIUS., temperature 299K | ||||||||||||||||||||||||
Crystal grow | *PLUS pH: 7.2 / Method: vapor diffusion, hanging drop / Details: Wang, C.R., (1997) Protein Sci., 6, 2264. | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 130 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: FUJI / Detector: IMAGE PLATE / Date: Oct 1, 1995 / Details: MIRROR |
Radiation | Monochromator: SI(111) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9793 Å / Relative weight: 1 |
Reflection | Resolution: 2.15→30 Å / Num. obs: 55873 / % possible obs: 74.3 % / Observed criterion σ(I): -3 / Redundancy: 1.9 % / Biso Wilson estimate: 16.3 Å2 / Rmerge(I) obs: 0.048 / Rsym value: 0.048 / Net I/σ(I): 14.6 |
Reflection shell | Resolution: 2.15→2.22 Å / Redundancy: 1.58 % / Rmerge(I) obs: 0.113 / Mean I/σ(I) obs: 4.2 / Rsym value: 0.113 / % possible all: 48 |
Reflection | *PLUS Num. measured all: 105390 |
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Processing
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Refinement | Method to determine structure: ![]()
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Displacement parameters | Biso mean: 37.2 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.15→30 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.15→2.28 Å / Rfactor Rfree error: 0.013 / Total num. of bins used: 6
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Xplor file |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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