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- PDB-1aca: THREE-DIMENSIONAL STRUCTURE OF THE COMPLEX BETWEEN ACYL-COENZYME ... -

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Basic information

Entry
Database: PDB / ID: 1aca
TitleTHREE-DIMENSIONAL STRUCTURE OF THE COMPLEX BETWEEN ACYL-COENZYME A BINDING PROTEIN AND PALMITOYL-COENZYME A
ComponentsACYL-COENZYME A BINDING PROTEIN
KeywordsACYL-COENZYME A BINDING PROTEIN
Function / homology
Function and homology information


Mitochondrial Fatty Acid Beta-Oxidation / fatty-acyl-CoA binding / fatty acid metabolic process / endoplasmic reticulum / Golgi apparatus
Similarity search - Function
Acyl-CoA-binding protein, ACBP, conserved site / Acyl-CoA-binding (ACB) domain signature. / Acyl-CoA-binding protein, ACBP / Acyl-CoA binding protein superfamily / Acyl CoA binding protein / Acyl-CoA-binding (ACB) domain profile. / Acyl-CoA Binding Protein - #10 / Acyl-CoA Binding Protein / FERM/acyl-CoA-binding protein superfamily / Up-down Bundle / Mainly Alpha
Similarity search - Domain/homology
COENZYME A / PALMITIC ACID / Acyl-CoA-binding protein
Similarity search - Component
Biological speciesBos taurus (domestic cattle)
MethodSOLUTION NMR
AuthorsKragelund, B.B. / Andersen, K.V. / Madsen, J.C. / Knudsen, J. / Poulsen, F.M.
Citation
Journal: J.Mol.Biol. / Year: 1993
Title: Three-dimensional structure of the complex between acyl-coenzyme A binding protein and palmitoyl-coenzyme A.
Authors: Kragelund, B.B. / Andersen, K.V. / Madsen, J.C. / Knudsen, J. / Poulsen, F.M.
#1: Journal: J.Mol.Biol. / Year: 1992
Title: Three-Dimensional Structure in Solution of Acyl-Coenzyme a Binding Protein from Bovine Liver
Authors: Andersen, K.V. / Poulsen, F.M.
#2: Journal: Biochemistry / Year: 1991
Title: The Secondary Structure in Solution of Acyl-Coenzyme a Binding Protein from Bovine Liver Using 1H Nuclear Magnetic Resonance Spectroscopy
Authors: Andersen, K.V. / Ludvigsen, S. / Mandrup, S. / Knudsen, J. / Poulsen, F.M.
#3: Journal: Biochem.J. / Year: 1987
Title: Amino Acid Sequence of Acyl-Coa-Binding Protein from Cow Liver
Authors: Mikkelsen, J. / Hojrup, P. / Nielsen, P.F. / Roepstorff, P. / Knudsen, J.
History
DepositionNov 17, 1992Processing site: BNL
Revision 1.0Jan 31, 1994Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3May 23, 2012Group: Other
Revision 1.4Nov 29, 2017Group: Derived calculations / Other
Category: pdbx_database_status / struct_conf / struct_conf_type
Item: _pdbx_database_status.process_site
Revision 1.5Apr 10, 2024Group: Data collection / Database references / Derived calculations
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / struct_conn / struct_site
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.pdbx_leaving_atom_flag / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: ACYL-COENZYME A BINDING PROTEIN
hetero molecules


Theoretical massNumber of molelcules
Total (without water)10,9553
Polymers9,9311
Non-polymers1,0242
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)20 / -
Representative

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Components

#1: Protein ACYL-COENZYME A BINDING PROTEIN


Mass: 9931.289 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Bos taurus (domestic cattle) / Organ: LIVER / Production host: Escherichia coli (E. coli) / References: UniProt: P07107
#2: Chemical ChemComp-COA / COENZYME A


Mass: 767.534 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C21H36N7O16P3S
#3: Chemical ChemComp-PLM / PALMITIC ACID


Mass: 256.424 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C16H32O2

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

Software
NameClassification
X-PLORmodel building
X-PLORrefinement
X-PLORphasing
NMR software
NameDeveloperClassification
X-PLORBRUNGERrefinement
DIANAGUNTERTrefinement
RefinementSoftware ordinal: 1
Details: THE THERMAL PARAMETERS GIVEN IN THIS ENTRY REPRESENT THE ATOMIC RMS DEVIATION OF THE INDIVIDUAL STRUCTURES ABOUT THE MEAN COORDINATE POSITIONS CALCULATED BY FITTING C, N, AND CA ATOMS OF THE ...Details: THE THERMAL PARAMETERS GIVEN IN THIS ENTRY REPRESENT THE ATOMIC RMS DEVIATION OF THE INDIVIDUAL STRUCTURES ABOUT THE MEAN COORDINATE POSITIONS CALCULATED BY FITTING C, N, AND CA ATOMS OF THE HELICES. THE ATOMS USED FOR FITTING ARE INDICATED BY OCCUPANCIES EQUAL TO 1.00.
NMR ensembleConformers submitted total number: 20

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