+データを開く
-基本情報
登録情報 | データベース: PDB / ID: 1aab | ||||||
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タイトル | NMR STRUCTURE OF RAT HMG1 HMGA FRAGMENT | ||||||
要素 | HIGH MOBILITY GROUP PROTEIN | ||||||
キーワード | DNA-BINDING / HMG-BOX | ||||||
機能・相同性 | 機能・相同性情報 Apoptosis induced DNA fragmentation / male-specific defense response to bacterium / positive regulation of myeloid progenitor cell differentiation / open form four-way junction DNA binding / calcium-dependent protein kinase regulator activity / crossed form four-way junction DNA binding / positive regulation of myeloid cell apoptotic process / Pyroptosis / TRAF6 mediated NF-kB activation / Advanced glycosylation endproduct receptor signaling ...Apoptosis induced DNA fragmentation / male-specific defense response to bacterium / positive regulation of myeloid progenitor cell differentiation / open form four-way junction DNA binding / calcium-dependent protein kinase regulator activity / crossed form four-way junction DNA binding / positive regulation of myeloid cell apoptotic process / Pyroptosis / TRAF6 mediated NF-kB activation / Advanced glycosylation endproduct receptor signaling / plasmacytoid dendritic cell activation / TAK1-dependent IKK and NF-kappa-B activation / Regulation of TLR by endogenous ligand / regulation of tolerance induction / positive regulation of mismatch repair / regulation of T cell mediated immune response to tumor cell / negative regulation of apoptotic cell clearance / negative regulation of RNA polymerase II transcription preinitiation complex assembly / positive regulation of toll-like receptor 2 signaling pathway / positive regulation of myeloid cell differentiation / DNA geometric change / myeloid dendritic cell activation / T-helper 1 cell activation / C-X-C chemokine binding / T-helper 1 cell differentiation / positive regulation of macrophage inflammatory protein 1 alpha production / bent DNA binding / positive regulation of glycogen catabolic process / positive regulation of dendritic cell differentiation / glycolipid binding / negative regulation of CD4-positive, alpha-beta T cell differentiation / positive regulation of toll-like receptor 4 signaling pathway / positive regulation of toll-like receptor 9 signaling pathway / neutrophil clearance / endothelial cell chemotaxis / positive regulation of DNA ligation / eye development / positive regulation of interleukin-1 production / RAGE receptor binding / alphav-beta3 integrin-HMGB1 complex / induction of positive chemotaxis / bubble DNA binding / V(D)J recombination / regulation of nucleotide-excision repair / myeloid cell differentiation / myeloid progenitor cell differentiation / macrophage activation involved in immune response / positive regulation of innate immune response / positive regulation of monocyte chemotactic protein-1 production / inflammatory response to antigenic stimulus / positive regulation of chemokine (C-X-C motif) ligand 2 production / positive regulation of monocyte chemotaxis / cellular response to interleukin-7 / supercoiled DNA binding / glycogen catabolic process / apoptotic cell clearance / myoblast proliferation / endothelial cell proliferation / DNA binding, bending / positive regulation of vascular endothelial cell proliferation / positive regulation of mesenchymal cell proliferation / Neutrophil degranulation / positive regulation of wound healing / negative regulation of DNA replication / positive regulation of sprouting angiogenesis / positive regulation of activated T cell proliferation / positive regulation of smooth muscle cell migration / protein kinase activator activity / phosphatidylserine binding / response to type II interferon / positive regulation of interleukin-10 production / negative regulation of blood vessel endothelial cell migration / negative regulation of type II interferon production / endoplasmic reticulum-Golgi intermediate compartment / positive regulation of blood vessel endothelial cell migration / positive regulation of myoblast differentiation / cellular response to interleukin-1 / positive regulation of interferon-alpha production / positive regulation of autophagy / heterochromatin formation / response to glucose / DNA polymerase binding / four-way junction DNA binding / response to glucocorticoid / condensed chromosome / positive regulation of interleukin-12 production / activation of innate immune response / transcription repressor complex / positive regulation of interferon-beta production / positive regulation of mitotic cell cycle / positive regulation of interleukin-1 beta production / cytokine activity / positive regulation of interleukin-8 production / lipopolysaccharide binding / positive regulation of JNK cascade / peptide binding / lung development / response to insulin / cell morphogenesis / base-excision repair 類似検索 - 分子機能 | ||||||
生物種 | Rattus norvegicus (ドブネズミ) | ||||||
手法 | 溶液NMR | ||||||
データ登録者 | Hardman, C.H. / Broadhurst, R.W. / Raine, A.R.C. / Grasser, K.D. / Thomas, J.O. / Laue, E.D. | ||||||
引用 | ジャーナル: Biochemistry / 年: 1995 タイトル: Structure of the A-domain of HMG1 and its interaction with DNA as studied by heteronuclear three- and four-dimensional NMR spectroscopy. 著者: Hardman, C.H. / Broadhurst, R.W. / Raine, A.R. / Grasser, K.D. / Thomas, J.O. / Laue, E.D. #1: ジャーナル: To be Published タイトル: Backbone Dynamics of the a Domain of Hmg1 as Studied by 15N NMR Spectroscopy 著者: Broadhurst, R.W. / Hardman, C.H. / Thomas, J.O. / Laue, E.D. | ||||||
履歴 |
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-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
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-ダウンロードとリンク
-ダウンロード
PDBx/mmCIF形式 | 1aab.cif.gz | 861.9 KB | 表示 | PDBx/mmCIF形式 |
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PDB形式 | pdb1aab.ent.gz | 724.6 KB | 表示 | PDB形式 |
PDBx/mmJSON形式 | 1aab.json.gz | ツリー表示 | PDBx/mmJSON形式 | |
その他 | その他のダウンロード |
-検証レポート
文書・要旨 | 1aab_validation.pdf.gz | 353 KB | 表示 | wwPDB検証レポート |
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文書・詳細版 | 1aab_full_validation.pdf.gz | 576.3 KB | 表示 | |
XML形式データ | 1aab_validation.xml.gz | 46.6 KB | 表示 | |
CIF形式データ | 1aab_validation.cif.gz | 77.5 KB | 表示 | |
アーカイブディレクトリ | https://data.pdbj.org/pub/pdb/validation_reports/aa/1aab ftp://data.pdbj.org/pub/pdb/validation_reports/aa/1aab | HTTPS FTP |
-関連構造データ
-リンク
-集合体
登録構造単位 |
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1 |
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NMR アンサンブル |
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-要素
#1: タンパク質 | 分子量: 9689.119 Da / 分子数: 1 / 断片: FRAGMENT A (RESIDUES 1 - 83) / 変異: C22S / 由来タイプ: 組換発現 / 由来: (組換発現) Rattus norvegicus (ドブネズミ) / 株: SPRAGUE-DAWLEY / 組織: LIVER / プラスミド: PT7-HMGACS / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): DE3 / 参照: UniProt: P63159 |
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-実験情報
-実験
実験 | 手法: 溶液NMR |
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-試料調製
結晶化 | *PLUS 手法: other |
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-解析
ソフトウェア |
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NMR software | 名称: X-PLOR / バージョン: 3.1 / 開発者: BRUNGER / 分類: 精密化 | ||||||||||||
NMRアンサンブル | 登録したコンフォーマーの数: 33 |