+データを開く
-基本情報
登録情報 | データベース: PDB / ID: 106d | ||||||||||||||||||
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タイトル | Solution structures of the i-motif tetramers of D(TCC), D(5MCCT) and D(T5MCC). Novel NOE connections between amino protons and sugar protons | ||||||||||||||||||
要素 | DNA (5'-D(*キーワード | DNA | 機能・相同性 | DNA | 機能・相同性情報 手法 | 溶液NMR | データ登録者 | Leroy, J.-L. / Gueron, M. | 引用 | ジャーナル: Structure / 年: 1995 | タイトル: Solution structures of the i-motif tetramers of d(TCC), d(5methylCCT) and d(T5methylCC): novel NOE connections between amino protons and sugar protons. 著者: Leroy, J.L. / Gueron, M. 履歴 |
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-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
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-ダウンロードとリンク
-ダウンロード
PDBx/mmCIF形式 | 106d.cif.gz | 65.1 KB | 表示 | PDBx/mmCIF形式 |
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PDB形式 | pdb106d.ent.gz | 40.4 KB | 表示 | PDB形式 |
PDBx/mmJSON形式 | 106d.json.gz | ツリー表示 | PDBx/mmJSON形式 | |
その他 | その他のダウンロード |
-検証レポート
文書・要旨 | 106d_validation.pdf.gz | 320.2 KB | 表示 | wwPDB検証レポート |
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文書・詳細版 | 106d_full_validation.pdf.gz | 405.6 KB | 表示 | |
XML形式データ | 106d_validation.xml.gz | 5.9 KB | 表示 | |
CIF形式データ | 106d_validation.cif.gz | 7.3 KB | 表示 | |
アーカイブディレクトリ | https://data.pdbj.org/pub/pdb/validation_reports/06/106d ftp://data.pdbj.org/pub/pdb/validation_reports/06/106d | HTTPS FTP |
-関連構造データ
-リンク
-集合体
登録構造単位 |
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Atom site foot note | 1: SOME OF THE CYTIDINES ARE PROTONATED AT THE N3 POSITION. THESE RESIDUES HAVE BEEN ASSIGNED THE RESIDUE NAME C IN THE ENTRY AND ATOM H3 HAS BEEN FOOTNOTED. | |||||||||
NMR アンサンブル |
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-要素
#1: DNA鎖 | 分子量: 771.646 Da / 分子数: 4 / 由来タイプ: 合成 |
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-実験情報
-実験
実験 | 手法: 溶液NMR |
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-試料調製
結晶化 | *PLUS 手法: other / 詳細: NMR |
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-解析
ソフトウェア |
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精密化 | ソフトェア番号: 1 詳細: 5MC STANDS FOR 5-METHYLCYTIDINE. THE STRUCTURE IS FORMED OF FOUR EQUIVALENT 5MCCT STRANDS DESIGNATED A, B, C, D. STRANDS A AND C, CONNECTED BY TWO HEMI-PROTONATED BASE PAIRS (5MC1.5MC1+ AND ...詳細: 5MC STANDS FOR 5-METHYLCYTIDINE. THE STRUCTURE IS FORMED OF FOUR EQUIVALENT 5MCCT STRANDS DESIGNATED A, B, C, D. STRANDS A AND C, CONNECTED BY TWO HEMI-PROTONATED BASE PAIRS (5MC1.5MC1+ AND C2.C2+), FORM A PARALLEL-STRANDED DUPLEX. THE RELATION BETWEEN STRANDS B AND D IS THE SAME AS THAT BETWEEN STRANDS A AND C. THE STRANDS OF EACH DUPLEX ARE RELATED BY A LONGITUDINAL TWO-FOLD SYMMETRY AXIS. THE DUPLEXES HAVE THE SAME LONGITUDINAL AXIS, AND THEY ARE ANTI-PARALLEL. THEIR HEMI-PROTONATED C.C+ BASE PAIRS ARE INTERCALATED FACE-TO-FACE. THE DUPLEXES CAN BE TRANSFORMED INTO ONE ANOTHER BY A 180 DEGREE ROTATION AROUND A TWO-FOLD AXIS PERPENDICULAR TO THE LONGITUDINAL AXIS, AND CONSEQUENTLY AROUND A THIRD AXIS PERPENDICULAR TO THE FIRST TWO. THE H3 IMINO PROTONS OF THE HEMI-PROTONATED 5MC1.5MC1+ PAIRS WERE NOT INCORPORATED IN THE COMPUTATIONS. THOSE OF THE C2.C2+ PAIRS WERE ARBITRARILY LOCATED ON THE C2 RESIDUES OF STRANDS A AND B, RESPECTIVELY. | ||||||||
NMRアンサンブル | 登録したコンフォーマーの数: 8 |