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- EMDB-9858: Structure of the archaeal Archaeoglobus fulgidus oligosaccharyltr... -
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Open data
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Basic information
Entry | Database: EMDB / ID: EMD-9858 | |||||||||
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Title | Structure of the archaeal Archaeoglobus fulgidus oligosaccharyltransferase (AfAglB-L) embedded in nanodisc | |||||||||
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Biological species | ![]() ![]() | |||||||||
Method | single particle reconstruction / negative staining / Resolution: 21.0 Å | |||||||||
![]() | Kawasaki Y / Mayanagi K / Kohda D | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structure of the archaeal Archaeoglobus fulgidus oligosaccharyltransferase (AfAglB-L) embedded in nanodisc Authors: Kawasaki Y / Mayanagi K / Kohda D | |||||||||
History |
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Structure visualization
Movie |
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Structure viewer | EM map: ![]() ![]() ![]() |
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 989 KB | ![]() | |
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Header (meta data) | ![]() ![]() | 10.4 KB 10.4 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 3.4 KB | Display | ![]() |
Images | ![]() | 85.8 KB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 78.5 KB | Display | ![]() |
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Full document | ![]() | 77.6 KB | Display | |
Data in XML | ![]() | 493 B | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 2.76 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
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Sample components
-Entire : Archaeoglobus fulgidus oligosaccharyltransferase (AfAglB-L) embed...
Entire | Name: Archaeoglobus fulgidus oligosaccharyltransferase (AfAglB-L) embedded in nanodisc |
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Components |
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-Supramolecule #1: Archaeoglobus fulgidus oligosaccharyltransferase (AfAglB-L) embed...
Supramolecule | Name: Archaeoglobus fulgidus oligosaccharyltransferase (AfAglB-L) embedded in nanodisc type: complex / ID: 1 / Parent: 0 |
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Source (natural) | Organism: ![]() ![]() |
Recombinant expression | Organism: ![]() ![]() |
-Experimental details
-Structure determination
Method | negative staining |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 7.4 Component:
Details: 20 mM Tris-HCl (pH 7.4), 100 mM NaCl | |||||||||
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Staining | Type: NEGATIVE / Material: uranyl acetate Details: Negatively stained EM specimens were prepared using uranyl-acetate stain. | |||||||||
Grid | Model: Homemade / Material: COPPER / Mesh: 200 / Support film - Material: CARBON / Support film - topology: CONTINUOUS / Pretreatment - Type: GLOW DISCHARGE / Pretreatment - Atmosphere: AIR | |||||||||
Details | This sample was monodisperse |
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Electron microscopy
Microscope | FEI TECNAI 20 |
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Image recording | Film or detector model: FEI EAGLE (2k x 2k) / Digitization - Dimensions - Width: 2048 pixel / Digitization - Dimensions - Height: 2048 pixel / Number grids imaged: 1 / Number real images: 250 / Average exposure time: 120.0 sec. / Average electron dose: 50.0 e/Å2 |
Electron beam | Acceleration voltage: 200 kV / Electron source: LAB6 |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Cs: 2.0 mm |